Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 6e-13 seq3385 82.4 8e-11 >seq7 Length=104786220 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||||||||| ||||||||||| || || ||| || |||||||| Sbjct 35874049 GCCTTTGC-TGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGCT 35873991 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||||||||| || |||| ||| || || || ||||| Sbjct 35873990 AAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGAT 35873943 >seq3385 Length=62036 Score = 82.4 bits (90), Expect = 8e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||||||||| | ||||||||| || || ||| || |||||||| Sbjct 20526 GCCTTTGC-TGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGCT 20584 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||||||||||| | |||| ||| || || || ||||| | |||| || Sbjct 20585 AAAGAAGAGAGGCCTCATGCCTGAACTGACTTTTTCAAATGAACTGATCAGCAGGGATGA 20644 Query 60110 GGGCCTCCA 60118 || || || Sbjct 20645 AGGTCTTCA 20653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548487747149760