Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq1874 118 4e-22 >seq1874 Length=4495 Score = 118 bits (130), Expect = 4e-22 Identities = 180/250 (72%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 32682 GCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAA-GACCT 32740 || || ||||||||||| ||||| || ||||| ||||| ||| | || ||||| Sbjct 3444 GCCAAACTCCTGATCGTCGACGAAGTGTCGATGGTCGACGA-CAGTTTGGCTCGCGACCT 3386 Query 32741 GCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTCAT 32800 |||||| || | || || ||||||| ||| ||||| || || |||||||| ||||||| Sbjct 3385 GCTGTCGTTTGACGTTCCTATCCTCGTCCTTGGCGATCCGGCGCAGCTGCCTCCCGTCAA 3326 Query 32801 GGGGGCCGGGTTCTTCACCAA-GCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGAC 32859 || | |||| |||| ||| || | | ||||| | || ||||| | || || | Sbjct 3325 AGGCGAGGGGTATTTCATCAACGCTGCA-CCCGACACGATGCTTACCGAGGTTCATCGTC 3267 Query 32860 AGGCCCGCGACAACCCGATCATCGAGATGTCTCGCAT---CGTCCGCGAAGGCGGTGCCC 32916 |||| |||||||| ||||||||| ||| |||| ||||||||| |||||||| | Sbjct 3266 AGGCGCGCGACAATCCGATCATCCGCATG---AGCATGGACGTCCGCGAGGGCGGTGCGC 3210 Query 32917 TGTCCCTGGG 32926 | ||| ||| Sbjct 3209 TAACCCGGGG 3200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191475711736320