Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq18 448 4e-121 seq2 156 4e-33 seq15 149 6e-31 >seq18 Length=130317789 Score = 448 bits (496), Expect = 4e-121 Identities = 545/743 (73%), Gaps = 0/743 (0%) Strand=Plus/Plus Query 34139 GGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCC 34198 |||| | ||||| |||||| ||||| || || ||||| || |||||||||| ||||| Sbjct 85150867 GGCTTCAAGAAGGAGGACCGCACCGGCACAGGCACCCTGTCGGTGTTCGGCATGCAGGCA 85150926 Query 34199 CGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGC 34258 ||||||| ||| | | |||||||| ||||| || || ||||| |||| ||||||||| Sbjct 85150927 CGATACAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGT 85150986 Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318 || | |||||| || ||||||| | | ||| |||| || | || || | || ||| Sbjct 85150987 GTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAATTGTCCTCC 85151046 Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC 34378 ||| |||| |||||||| || | || || |||||||||||||||| ||| || Sbjct 85151047 AAGGGAGTGAGAATCTGGGATGCCAATGGATCCCGAGACTTTCTGGACAGCTTGGGATTT 85151106 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 | | || || | || ||| ||||||| || || || ||||| ||||| || ||||| Sbjct 85151107 TCTGCCCGACAGAAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGA 85151166 Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 || ||||| | | || | || || ||||||| |||| ||||||||||| | Sbjct 85151167 GCAGAGTACAAAGATATGGATTCAGATTACCCGGGACAAGGAGTAGACCAGCTGCAAAAA 85151226 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 |||| |||||| | || ||||||||||||||||| ||| | ||||| || |||||| Sbjct 85151227 ATGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAAC 85151286 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC 34618 || || ||||| || |||||||| || || || ||||| ||||||| || ||||| || Sbjct 85151287 CCAAAAGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTG 85151346 Query 34619 GCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTG 34678 | ||||||||||||||| ||||| || || || | || ||||| ||||| | || ||| Sbjct 85151347 GTGAATGGGGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTG 85151406 Query 34679 CCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTG 34738 || ||||||||||| || || ||||||||||| |||||||| || ||| || || || Sbjct 85151407 CCTTTCAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGTCTG 85151466 Query 34739 GTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAG 34798 || || || | || || || ||||| ||||| ||||| |||||||| || || ||| Sbjct 85151467 CAGCCAGGTGATTTTGTCCACACTTTGGGAGATGCACATATTTACCTGAATCATATAGAG 85151526 Query 34799 CGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858 | ||| || ||||| || ||||| || |||| ||||| |||||||||| ||||| Sbjct 85151527 CCGCTGAAAATTCAGCTACAGCGAGAACCAAGACCTTTCCCAAAGCTCAAAATCCTTCGA 85151586 Query 34859 GCCGTCACCTCAATCGATGACTT 34881 || |||||||||| || Sbjct 85151587 AAAGTTGAGACAATCGATGATTT 85151609 Score = 448 bits (496), Expect = 4e-121 Identities = 545/743 (73%), Gaps = 0/743 (0%) Strand=Plus/Minus Query 6464 AAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCT 6523 || |||||||||| || ||||| |||||||||| ||||| |||| || ||| Sbjct 85151609 AAATCATCGATTGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGTCTTGGTTCT 85151550 Query 6524 CGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAAC 6583 || || ||||| || ||| |||| || || |||||||| ||||| ||||| ||||| Sbjct 85151549 CGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAA 85151490 Query 6584 GTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGA 6643 || || || | || || || || || || ||| || |||||||| ||||||||| Sbjct 85151489 GTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTGCAATCATGTAGGTGAGCAGA 85151430 Query 6644 GCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGC 6703 || || || ||||||||||| ||||| || | ||||| ||||| || | || || || Sbjct 85151429 GCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGT 85151370 Query 6704 TGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763 ||||| ||||||||||||||| | || ||||| || ||||||| ||||| || || || Sbjct 85151369 TGGCAAGACAGCTCCCCATTCACCACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGT 85151310 Query 6764 GCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG 6823 |||||||| || ||||| || |||||||| || ||||| | ||| ||||||||||||||| Sbjct 85151309 GCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGG 85151250 Query 6824 TTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCC 6883 || || | |||||| |||| | ||||||||||| |||| ||||||| || || Sbjct 85151249 TTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTACTCCTTGTCCCGGGTAATCT 85151190 Query 6884 GCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCC 6943 | || | | ||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 85151189 GAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCC 85151130 Query 6944 AAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGA 7003 | ||| || | || || | | || ||| |||||||||||||||| || || | Sbjct 85151129 AGGTCCCCTTTCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTG 85151070 Query 7004 GCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACG 7063 || |||||||| |||| ||| ||| || | || || | || |||| ||| | | Sbjct 85151069 GCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATA 85151010 Query 7064 AACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGA 7123 ||||||| || |||||| | || ||||||||| |||| ||||| || || ||||| ||| Sbjct 85151009 AACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGA 85150950 Query 7124 AATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCG 7183 ||||| | | ||| ||||||| ||||| |||||||||| || ||||| || || ||| Sbjct 85150949 AATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAACACCGACAGGGTGCCTGTGCCG 85150890 Query 7184 GTCCGGTCCCCCTTCCGGTAGCC 7206 || |||||| ||||| | |||| Sbjct 85150889 GTGCGGTCCTCCTTCTTGAAGCC 85150867 >seq2 Length=131945496 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34139 GGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCC 34198 |||| | ||||| |||||| ||||| || || ||||| || |||||||||| ||||| Sbjct 87052770 GGCTTCAAGAAGGAGGACCGCACCGGCACAGGCACCCTGTCGGTGTTCGGCATGCAGGCA 87052829 Query 34199 CGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGC 34258 ||||||| ||| | | |||||||| ||||| || || ||||| |||| ||||||||| Sbjct 87052830 CGATACAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGT 87052889 Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318 || | |||||| || ||||||| | | ||| |||| || | || || | || ||| Sbjct 87052890 GTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAATTGTCCTCC 87052949 Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACA 34367 ||| |||| |||||||| || | || || |||||||||||||||| Sbjct 87052950 AAGGGAGTGAGAATCTGGGATGCCAATGGATCCCGAGACTTTCTGGACA 87052998 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 6978 TGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCT 7037 |||||||||||||||| || || | || |||||||| |||| ||| ||| || | | Sbjct 87052998 TGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATT 87052939 Query 7038 CCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGT 7097 | || | || |||| ||| | | ||||||| || |||||| | || ||||||||| Sbjct 87052938 CTTTAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGA 87052879 Query 7098 ACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGC 7157 |||| ||||| || || ||||| |||||||| | | ||| ||||||| ||||| ||| Sbjct 87052878 ACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGC 87052819 Query 7158 CGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206 ||||||| || ||||| || || ||||| |||||| ||||| | |||| Sbjct 87052818 CGAACACCGACAGGGTGCCTGTGCCGGTGCGGTCCTCCTTCTTGAAGCC 87052770 >seq15 Length=152823684 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| || |||||||| ||||||||||| || || ||||||||||| ||||| || | Sbjct 27100113 GATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAG 27100172 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | || || |||||||| ||||||||||||||| | || ||||| Sbjct 27100173 ACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAA 27100232 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || ||||||| ||||| || || || |||||||| || ||||| Sbjct 27100233 CTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 27100277 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| || ||||| || | |||| Sbjct 27100277 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAAT 27100218 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| |||||||| || || | || ||||| ||||| | || ||||| ||| Sbjct 27100217 GGGGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCTTTC 27100158 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || || ||||||||||| |||||||| || ||| || Sbjct 27100157 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATC 27100113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 27100947 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 27101006 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 ||||| | ||||||||||| |||| |||||||| || || Sbjct 27101007 ATCACTTTTTGCAGCTGGTCTACTCCTTGTCCCGAGTAATC 27101047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || |||||||| |||| ||||||||||| | ||||| |||||| | || ||| Sbjct 27101047 GATTACTCGGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 27100988 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||| ||| | ||||| || |||||||| || Sbjct 27100987 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 27100947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448232119874880