Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq18 185 7e-42 seq8 165 7e-36 seq1 122 7e-23 seq15 111 1e-19 >seq18 Length=130317789 Score = 185 bits (204), Expect = 7e-42 Identities = 422/625 (68%), Gaps = 34/625 (5%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| ||||| || ||||||| || | ||| ||||| || | || || Sbjct 85151543 AGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAAGTGTGG 85151484 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || || ||||| | || ||||||||||| || | || | ||| Sbjct 85151483 ACAAAATCACCTGGCTGCAGACCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAG 85151424 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || ||||| || ||||||||||| ||| |||| |||||||| | ||||||| Sbjct 85151423 CTGGCAATGTTGAAAGGCACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGTTGGCAA 85151364 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT- 118694 || |||||||| || | ||||| ||||||| | | || || |||||||| |||| Sbjct 85151363 GACAGCTCCCCATTCACCACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 85151304 Query 118695 ---GGAA-CTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTGCTAT- 118744 |||| || ||||| |||||||| | ||||| |||||| || Sbjct 85151303 AGGGGAAGATCTTTTGGG-----TTCCAGGC-----ACACATGATGATTCTTCTGTCATC 85151254 Query 118745 ATGGTTCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTAT 118804 | |||| || || ||||| | || || | ||| || || || | ||| | | Sbjct 85151253 AGGGTTGGTTTTG-ATGGTGTCAATCATTTTTTGCAGCTGGTCTACTCCTTGTCCCGGGT 85151195 Query 118805 ACTGAGACTCGCAT-CCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACA 118863 | | || || ||| |||| || ||||| |||||| |||||||| ||||||||||| Sbjct 85151194 AATCTGAATC-CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACT 85151136 Query 118864 GGCCCCAGATCTCC---CTG--GGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTT 118918 || ||||| || || ||| || | |||||| || | | || | |||| ||| Sbjct 85151135 GGGCCCAGGTCCCCTTTCTGTCGGGCAGAAAATC----CCAAGCTGTC-CAGAAAGTCTC 85151081 Query 118919 TTGACCCATTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAG 118978 || ||||| |||| ||| || ||||| || | || || |||| ||||| | Sbjct 85151080 GGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGG 85151021 Query 118979 AACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTG 119038 | || | | |||||| | | |||||| | ||| || |||| || ||| ||| |||| Sbjct 85151020 ATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTTTGGTTG 85150961 Query 119039 TAAACAGTGGAAACTGACCTCTAAG 119063 | | ||| ||||| | | |||| || Sbjct 85150960 TGAGCAGAGGAAATTCATCTCTCAG 85150936 >seq8 Length=97876770 Score = 165 bits (182), Expect = 7e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| |||||||||||||||| ||| | || || Sbjct 43541308 ATTGTGACATGGCAGAAAAAGAAAGCCGTGAGCCCAGAAAACATGGTCACCTACAGCAAA 43541249 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| |||||||| | ||||| || |||||||| | || || | || ||||| ||| Sbjct 43541248 ATCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGGATAAATGTCACAGAGCTGGGA 43541189 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||| ||| || ||||||||||||||||||||||| ||||| || ||||||| | Sbjct 43541188 CTCTGGAACTCAAGCATCACCTTCTGGAACACAACATTGGAAGATGAGGGTTGCTACATG 43541129 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || ||||| ||||| ||| |||| | ||||||| || || || ||||| Sbjct 43541128 TGTCTCTTCAACACGTTTGGTTCTCAGAAGGTCTCAGGAACAGCTTGCCTTACCCT 43541073 >seq1 Length=198846266 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 106694527 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 106694468 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 106694467 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 106694408 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 106694407 ATCGCCCTGTGGATGACTGA 106694388 >seq15 Length=152823684 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || ||||||||||| || | || | |||||||| | || ||||| Sbjct 27100105 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGC 27100164 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||||||||| ||| |||| |||||||| | |||||||| |||||||| || | Sbjct 27100165 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 27100224 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||||| | | || || |||||||| |||| Sbjct 27100225 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 27100265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414449502039856