Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15 89.7 3e-13 seq12 89.7 3e-13 seq3 87.8 1e-12 seq8 82.4 5e-11 seq5 82.4 5e-11 >seq15 Length=152823684 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||| | || || || || ||||| || || || || ||| Sbjct 125085171 ATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGT 125085112 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||| || || | || || || || Sbjct 125085111 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCA 125085053 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | ||||| | |||||||| Sbjct 125085052 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGATTACAA 125084993 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 125084992 CATCCAGAAAGAGTCCAC 125084975 >seq12 Length=182815943 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| ||||| ||||| ||||| || || ||||| || | Sbjct 146741779 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTGGAGGTTGAACCCTGG 146741720 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || | || || ||||| | || || ||||| Sbjct 146741719 GACACTATAGAAAATGTAAAGGTCAAGACCCAGGATAAGGAAGGAATTCCTCCTGATCAG 146741660 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || | | | |||| | || ||||| || |||||| Sbjct 146741659 CAGAGGCTGATCTTTGCTGGTAAGCCTCCGAAAGATGGCCGGACTTT----GACTACAAC 146741604 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 146741603 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAG 146741569 >seq3 Length=125065471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| | ||| || || |||||||| || || || || Sbjct 98064821 AACATGCAGATCTTCGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTAGAGCCC 98064762 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || ||||| || || | || || || Sbjct 98064761 AGTGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGCCTCCCACCTGAC 98064702 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | ||||| ||||||||||| || || || | | ||| | |||||| Sbjct 98064701 CAGCAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTAC 98064642 Query 23788 AACATACAAAAAGAGTCCACATTACA 23813 ||||| || ||||||||||| || || Sbjct 98064641 AACATCCAGAAAGAGTCCACCTTGCA 98064616 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 62144675 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 62144734 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || ||||| || | || || || || Sbjct 62144735 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGATAAAGAGGGCATCCCCCCTGACCA 62144793 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || || ||||| | |||||| | |||||||| Sbjct 62144794 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAA 62144853 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 62144854 CATCCAGAAAGAGTCGAC 62144871 >seq8 Length=97876770 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| | ||| || || ||||| ||||| ||||| || | Sbjct 13844312 ATGCAGATTTTTGTGAAGACCCTTATGGGGAAGACCATCACGCTCGAGGTTGAACCCCTG 13844371 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| |||| || || || || ||||| | || || ||||| Sbjct 13844372 GACACCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 13844431 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | | ||||| || || || |||||||| | | || || || |||||| Sbjct 13844432 CAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAAGATGGCCATAC-TTGTTTGACTACAAC 13844490 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 13844491 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 13844525 >seq5 Length=117181667 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||||| || || ||||| |||| ||||| ||||| || Sbjct 9091818 AATGCAGATTTTTGTGAAGACCCTTACAGGGAAAACTGTCACGCTCGAGGTTGAACCCTG 9091759 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||| |||| || | || || ||||| | || || |||| Sbjct 9091758 GGACACTACAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGACTTCCTCCTCATCA 9091699 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | | ||||| || || || |||||||| | || ||||| || ||||| Sbjct 9091698 GCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTT----GACTACAA 9091643 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| |||| |||||||| | ||| | || || || Sbjct 9091642 CATTCAAAGGGAGTCCACCCTTCATCTGGTGTTGAG 9091607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337987338265232