Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 131 4e-25 seq10 120 7e-22 seq14 114 3e-20 seq5404 113 1e-19 seq11 109 1e-18 seq16 107 5e-18 seq12 104 6e-17 seq20 98.7 2e-15 seq15 87.8 4e-12 >seq3 Length=125065471 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 62144886 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 62144827 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 62144826 TCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 62144767 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 62144766 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 62144707 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 62144706 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62144675 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | || | |||||| Sbjct 62144658 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCT 62144599 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 62144598 TCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 62144539 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 62144538 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 62144479 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | |||||||| Sbjct 62144478 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 62144444 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| | ||||| ||||| |||| |||||||| | || || Sbjct 98064598 CGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTG 98064657 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| |||||||| || || ||||| || || | || ||||| || || | || Sbjct 98064658 TGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCC 98064717 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||||||||||| || || || || | Sbjct 98064718 TCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGA 98064777 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||| ||| || || | ||| | ||||| || Sbjct 98064778 GTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATGTT 98064821 >seq10 Length=90668104 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| | ||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 33660464 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 33660523 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||| || || | ||| || || | || ||||| || || || ||||||||||| Sbjct 33660524 CTCCAGCTGTTTGCCCGAGAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 33660583 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 33660584 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGT 33660643 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 33660644 CTTGCCCGTCA 33660654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || || ||||| || || ||||||||||| || || ||||| || |||||||| Sbjct 77725786 AATACCTGTCCGTCAGTGATGGAAATAACATTTGTTGGAATGTAAGCGGACACATCACCA 77725727 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || |||||||| | || |||||||| || | || ||||||||||| Sbjct 77725726 GCCTGTGTTTCAATGACTGGTAAGGCAGTCAAAGAGCCACCACCAAA 77725680 >seq14 Length=152946536 Score = 114 bits (126), Expect = 3e-20 Identities = 145/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGA---GTGGATTCTTTTTGGACATTGTAATCGGCCAA 225548 ||||||||||| |||||||| ||| ||||| || |||| | ||||| || | ||| Sbjct 128583614 ACGAAGTCTCAACACAAGGTGAAGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAA 128583673 Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 ||| | |||||||| |||||||| ||||| ||| | | | || || || || |||| Sbjct 128583674 AGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGGTCAACCTCTGCTGATCAGGAGGAAG 128583733 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||||| || ||| |||| ||| ||| ||| || ||||| |||| ||| || || Sbjct 128583734 TTCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTC 128583793 Query 225669 TAACGTGATCGTCTTGCCC 225687 | |||||| || || ||| Sbjct 128583794 GAGCGTGATGGTTTTCCCC 128583812 >seq5404 Length=16303 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || ||||| | || || ||||| |||||||| ||||||||| | ||||| Sbjct 5480 CCAAATTTATAATGTTATCGTAACTGCCCATGCATTTGTTATAATTTTCTTTATAGTTAT 5539 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || || || ||||| ||| | || || |||| ||||| || || || Sbjct 5540 ACCAATAATAATTGGAGGCTTTGGAAACTGACTTGTCCCACTAATAATTGGAGCCCCAGA 5599 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||||| || ||| | | || ||||||||||| ||| | ||||| || || || |||| Sbjct 5600 CATGGCATTCCCACGAATAAATAATATAAGTTTCTGACTTCTACCCCCATCATTCCTTCT 5659 >seq11 Length=59623150 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || || || || || || || ||||| | ||||| || | |||||| Sbjct 13412281 CGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 13412222 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||| ||| ||||| |||| || | || || | || |||| ||| Sbjct 13412221 CGGCCATCTTCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAGAATTCCT 13412163 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||| |||| ||| ||| ||| || ||||| |||| ||| || || | | Sbjct 13412162 TCCTTGTCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 13412103 Query 225673 GTGATCGTCTTGCCC 225687 ||||| || || ||| Sbjct 13412102 GTGATGGTTTTCCCC 13412088 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || || || || || || || ||||| | ||||| || | |||||| Sbjct 13413232 CGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 13413173 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||| ||| ||||| |||| || | || || | || |||| ||| Sbjct 13413172 CGGCCATCTTCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAGAATTCCT 13413114 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||| |||| ||| ||| ||| || ||||| |||| ||| || || | | Sbjct 13413113 TCCTTGTCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 13413054 Query 225673 GTGATCGTCTTGCCC 225687 ||||| || || ||| Sbjct 13413053 GTGATGGTTTTCCCC 13413039 >seq16 Length=150978388 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 |||||||| | | ||| | ||||||||||||||||| ||||| ||||| || | || Sbjct 58879373 TTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 58879432 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 |||| || ||||| || || || || |||||||| |||||| || |||||||| Sbjct 58879433 TGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGGTGTCA 58879492 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| |||| ||||| |||||||| |||| || || | || | |||||| Sbjct 58879493 CTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCTGCATT 58879552 Query 225715 TT 225716 || Sbjct 58879553 TT 58879554 >seq12 Length=182815943 Score = 104 bits (114), Expect = 6e-17 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || || || ||||| || ||||| | ||||| | |||||| Sbjct 146741562 ACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTA----GTCAAAGT 146741617 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||| | |||| ||||| ||||| || | || || || || ||||| || Sbjct 146741618 CCGGCCATCTTTCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCC 146741677 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || ||| |||| ||| ||| ||| || ||||| ||| ||| || || | Sbjct 146741678 TTCCTTATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAACCTCCAG 146741737 Query 225672 CGTGATCGTCTTGCCCGT 225689 |||||| || || ||||| Sbjct 146741738 CGTGATGGTTTTCCCCGT 146741755 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588 |||| |||||||| | | || | ||||||||||||||||| || || ||||| || Sbjct 121887487 TGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCTAGCTGCTTTCCTGCAAAGATGAGC 121887428 Query 225589 CGTTGTTGGTCGGGCGGAATACC----TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTC 225644 | ||| ||||| || ||||| || ||| || || |||||| || |||||| || Sbjct 121887427 CTTTGCTGGTCAGGGGGAATGCCCTCTTTCTTTATCCTGGATC-TTGCCTTCACGTTCTC 121887369 Query 225645 GATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||||||| || ||||| |||| ||||| |||||| |||| || || ||| Sbjct 121887368 GATGGTGTCACTGGGCTCCACATCTAGGGTGATGGTCTTGTTGGTCAGGGTCTTCTCGAA 121887309 Query 225705 CACTTGCATTTT 225716 | ||||||||| Sbjct 121887308 GATTTGCATTTT 121887297 Score = 91.5 bits (100), Expect = 4e-13 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || || || || || || ||||| | ||||| | |||||| Sbjct 92361978 ACGAAGTCTCAACACGAGTTGAAGGGTAGACTCCTTTTGAATGTTGTA----GTCAAAGT 92361923 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| |||||||| ||||| |||| | | || || || || ||||| || Sbjct 92361922 ATGGCCATCTTCCAGCTGCTTGCCAGCACAGATCAACCTCTGCTGATCAGGAGGAATTCC 92361863 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTC 225662 || ||| | |||||||| ||| ||| ||| || |||||||||| ||| Sbjct 92361862 TTTCTTATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTC 92361812 >seq20 Length=148322235 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| ||| || Sbjct 62281928 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGGGAGAGTATGGCCACCT 62281869 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTC-GGGCGGAATACCTTCCTTGTC 225620 |||||||||| ||| ||||| || | || ||||| ||| || || || || || || Sbjct 62281868 TCTAGCTGCTCGTTAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGGATGCCCTCTTTATC 62281809 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| | ||| ||||| || ||||| |||| ||||| || Sbjct 62281808 CTGGATCTTGGCCTTCACATTCTTGATAGTGTCACTGGGCTCCACCTCTAGGGTGATGGT 62281749 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| | ||| || || | ||| | |||||||| Sbjct 62281748 CTTACTGTTCATGGTCTTCACGAAGATCTGCATTTT 62281713 >seq15 Length=152823684 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| ||| || |||| | ||||| | || |||| | ||| |||| | || Sbjct 26701586 AGTCGCAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTAGTAGTCGGAAAGGGTGTGG 26701645 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || | || || ||||| || || | || ||||| | || || |||||| Sbjct 26701646 CCATCCTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCC 26701705 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| | ||||||||| || | || || || ||| Sbjct 26701706 TTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTG 26701765 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||| |||| || || ||||| | ||||| || Sbjct 26701766 ATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATGTT 26701806 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| ||| || |||| | ||||| | || |||| | ||| |||| | || Sbjct 26702791 AGTCGCAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTAGTAGTCGGAAAGGGTGTGG 26702850 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || | || || ||||| || || | || ||||| | || || |||||| Sbjct 26702851 CCATCCTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCC 26702910 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| | ||||||||| || | || || || ||| Sbjct 26702911 TTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTG 26702970 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||| |||| || || ||||| | ||||| || Sbjct 26702971 ATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATGTT 26703011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192448630630376