Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq18 320 1e-82 seq15 138 9e-28 seq5 82.4 6e-11 >seq18 Length=130317789 Score = 320 bits (354), Expect = 1e-82 Identities = 484/690 (70%), Gaps = 5/690 (1%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| ||| || || | || |||||||| ||||||| || | || | |||| Sbjct 85151568 TGGGAAAGG-TCTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGT 85151510 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||||||||| ||||||||||| || || || | || || |||| || | Sbjct 85151509 AAATATGTGCATCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTG 85151450 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||| ||||| |||| |||||||| ||||| || ||||| || || ||||| | Sbjct 85151449 CAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATAT 85151390 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 | |||||||||||||| || ||||| || ||||| || | ||| || |||||||| | Sbjct 85151389 CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACAGA 85151330 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909 ||||||||| ||||| || ||||| || | ||||| |||||||||||||||| || Sbjct 85151329 GGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGA 85151270 Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969 |||| | ||||| || |||||| | ||||| ||| | ||||||||||| || | Sbjct 85151269 TGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTA 85151210 Query 29970 CCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACT 30029 | || |||| ||| |||| | ||||||||||| | Sbjct 85151209 CTCCTTGTCCCGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATT 85151150 Query 30030 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGC-TCGAAGCCCCTCTTGTC 30087 |||| || || || || |||||||| |||| ||| | | || || ||| |||| Sbjct 85151149 GGAAACCATAAACTGGGCCCAGGTC-CCCT-TTCTGTCGGGCAGAAAATCCCAAGCTGTC 85151092 Query 30088 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30147 || |||||||| ||| || ||||| |||||||| | || ||||| ||| | ||||| Sbjct 85151091 CAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTT 85151032 Query 30148 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30207 | |||||||| || ||| ||||||| || |||||||| || ||||||| || || Sbjct 85151031 AGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACAC 85150972 Query 30208 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAA 30267 | ||||| ||||| || ||||| | | | |||| ||| | ||||| || || Sbjct 85150971 TCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAA 85150912 Query 30268 CATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 || |||| | || ||||| || | ||| Sbjct 85150911 CACCGACAGGGTGCCTGTGCCGGTGCGGTC 85150882 >seq15 Length=152823684 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| || || |||||||| ||||| |||| |||||||| ||||| || ||| Sbjct 27100105 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGC 27100164 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || |||||||||||||| |||||||| || ||||| || | | Sbjct 27100165 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 27100224 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || |||||||| | ||||||||| ||||| || ||||| || Sbjct 27100225 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 27100268 >seq5 Length=117181667 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 88589517 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 88589458 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||| ||||||| ||||| |||||| Sbjct 88589457 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 88589410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406136449583944