Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq18 365 3e-96 seq15 122 6e-23 >seq18 Length=130317789 Score = 365 bits (404), Expect = 3e-96 Identities = 499/690 (72%), Gaps = 5/690 (1%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| ||| || || | || |||||| | |||||||| || | |||| ||||| Sbjct 85151568 TGGGAAAGG-TCTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGT 85151510 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || ||||||| ||||||||||| || || || | || || |||| || | Sbjct 85151509 AAATATGTGCATCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTG 85151450 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| ||||| |||| |||||||| ||||| || || || || || ||||| | Sbjct 85151449 CAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATAT 85151390 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || ||||||||||| || || || || ||||| |||| || || |||||||| | Sbjct 85151389 CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACAGA 85151330 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 ||| ||||| ||||| || ||||| ||| | ||||| ||||||||||| |||| || Sbjct 85151329 GGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGA 85151270 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | ||||| || |||||| | ||||| ||| | ||||||||||| || | Sbjct 85151269 TGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTA 85151210 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || |||| ||| ||| ||| || ||||||||||||| ||||||||||||| Sbjct 85151209 CTCCTTGTCCCGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATT 85151150 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGC-TCGAAGCCCCTCTTGTC 27581 |||| || || || || |||||||| |||| ||| | | || || ||| |||| Sbjct 85151149 GGAAACCATAAACTGGGCCCAGGTC-CCCT-TTCTGTCGGGCAGAAAATCCCAAGCTGTC 85151092 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 || |||||||| ||| || ||||| |||||||| | || ||||| ||| | ||||| Sbjct 85151091 CAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTT 85151032 Query 27642 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 27701 | |||||||| || ||| ||||||| || |||||||| || ||||||| || || Sbjct 85151031 AGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACAC 85150972 Query 27702 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAA 27761 | ||||| ||||| || ||||| | | | |||| ||| | ||||| || || Sbjct 85150971 TCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAA 85150912 Query 27762 CACGGACAAGACTCCCGTGCCCGTCCTGTC 27791 ||| |||| | || ||||| || | ||| Sbjct 85150911 CACCGACAGGGTGCCTGTGCCGGTGCGGTC 85150882 >seq15 Length=152823684 Score = 122 bits (134), Expect = 6e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| || || |||||||| ||||| |||| |||||||| ||||| || || Sbjct 27100105 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGC 27100164 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| ||||| || || ||||| |||| Sbjct 27100165 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 27100224 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || |||||||| | ||| ||||| ||||| || ||||| ||| Sbjct 27100225 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 27100269 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || ||||||||||||| ||||||||||||||||| || || || || |||||||| Sbjct 27105585 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 27105644 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | | | || ||| |||||| |||||||| ||| || ||||| || Sbjct 27105645 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTGGCATC 27105704 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 27105705 CCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 27105752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369482863793924