Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1 156 6e-33 seq12 105 1e-17 seq5075 89.7 7e-13 seq3806 89.7 7e-13 >seq1 Length=198846266 Score = 156 bits (172), Expect = 6e-33 Identities = 181/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| |||| ||||| |||||||| || | ||| || ||||| || || || || Sbjct 151552849 ATGAGTCTGCTGGTTTGGAATAGTTGCTCATCCCCCCACTCAGGATGCTCCTGCTTGAGT 151552790 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | |||||||| |||||||| |||| |||||||| ||||| |||||||| || ||||| Sbjct 151552789 ATGTCGCACACTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGC 151552730 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| | || || || ||||| | || ||| || || | | ||||| Sbjct 151552729 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTTCAGGTTCTCAGGGATGTGAGGAGGG 151552670 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | ||||| ||||||||| | ||||||||||| || || |||| | | Sbjct 151552669 TAGATCATCTCTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAATGACC 151552610 Query 9484 TGAT 9487 | || Sbjct 151552609 TAAT 151552606 Score = 150 bits (166), Expect = 3e-31 Identities = 205/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||||||||| || || | |||| ||||||||||| | || | |||| |||| Sbjct 151554389 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 151554330 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| || || || |||||||| ||||||||||| || || |||||| Sbjct 151554329 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 151554270 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 151554269 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 151554210 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| || |||||||||| | | | |||||| |||| | |||| | Sbjct 151554209 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGGTACAGTTCCATGACATCGATG 151554150 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | | || ||||| || ||||||||||||| Sbjct 151554149 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCTG 151554104 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||| || || || | |||||||| || || | | || ||||| || ||| | | Sbjct 151550786 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 151550727 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 151550726 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 151550667 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 151550666 GGTGGACTGTCAATCAAATATGATCTGGCTGA 151550635 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/288 (67%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 8299 CAACGG-ACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGA 8357 |||||| ||||||||| || || | |||| | ||||||| | || | |||| || Sbjct 151544639 CAACGGGACACCCCTTCACATTTTTGCAGATGACAGACTGAGTTAAAGCAGTGTTGATGA 151544580 Query 8358 TCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGA 8417 || || | ||| |||| | |||||||| ||||||||||| || || ||||| Sbjct 151544579 TCTTAAAACTCACTACTCCACTCAAGGTGCTCGGCTTCCAGTATTGAGGAGAATAGATGG 151544520 Query 8418 CGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGA 8477 || || | || | ||| | |||||| || || | | || | | || || || | Sbjct 151544519 GATTACCCCTAAGTCTTTTCAAGGAGAATGGTGCTTCTAGTTCTACCAAACTTTCCCCAA 151544460 Query 8478 AGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGA 8537 |||| || | | ||| || || ||||||| | || | ||||| |||| | |||| Sbjct 151544459 AGATAGCATCTGCACGAGGTTTCTCCACCAGCAGACCAGGATACAGTTCCATGGTGTCGA 151544400 Query 8538 CGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | | | ||| ||||| | | || ||||| || ||||| ||||||| Sbjct 151544399 TGCCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCTG 151544352 >seq12 Length=182815943 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||| ||| ||| ||||| Sbjct 34689404 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCATCATCCCACGTGGGATGC 34689345 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | |||||||| | ||| ||||| | |||||||| |||| | | | | Sbjct 34689344 TCCTCCTTCAGCAGGTCGCACACGCGGTTATGTTCACGAAGCCAGATCGTGGAGAAGAGC 34689285 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || ||||| || | || ||||| |||| || || ||||||| Sbjct 34689284 ATCAGCCCCGGAAGCAACCCAAACACCTCCTGGCCCACAGCCA 34689242 >seq5075 Length=14012 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||| || || || | |||||||| || | | | || ||||| || ||||| | | Sbjct 11803 TCACCCTTCACACCCATGGGAGTTGGGCAGGCTTCTGCTACTGGAGGAAGGATCCTGGTG 11744 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||| |||||||||||| ||| | ||| | | ||||| | Sbjct 11743 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCACAGTGCACATTGTAAGTT 11684 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || | ||||||||||||| ||||| |||| Sbjct 11683 GGTGCACTGTCAATCAAATGTGATCTGGCTGA 11652 >seq3806 Length=21093 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||| || || || | |||||||| || | | | || ||||| || ||||| | | Sbjct 766 TCACCCTTCACACCCATGGGAGTTGGGCAGGCTTCTGCTACTGGAGGAAGGATCCTGGTG 707 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||| |||||||||||| ||| | ||| | | ||||| | Sbjct 706 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCACAGTGCACATTGTAAGTT 647 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || | ||||||||||||| ||||| |||| Sbjct 646 GGTGCACTGTCAATCAAATGTGATCTGGCTGA 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716828374972160