Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 152 1e-31 seq10 122 2e-22 seq20 114 3e-20 seq12 114 3e-20 >seq3 Length=125065471 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| ||||||| | || |||||||| || || || || || || |||||||| ||| Sbjct 62144438 AAGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAG 62144494 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| |||||||||||||||| || ||||| ||||| ||||| || | Sbjct 62144495 GTGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCA 62144552 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 |||| || |||||||| | || ||||| || || || ||||| |||||||| | || | Sbjct 62144553 TCCCCCCTGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTAGAAGATGGCCGCACCC 62144612 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 62144613 TCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 62144655 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 62144678 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 62144735 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||| Sbjct 62144736 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGC 62144795 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | ||||| | ||||| ||| Sbjct 62144796 AGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAACA 62144855 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 62144856 TCCAGAAAGAGTCGACCCTGCACCTGGT 62144883 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || | || || || ||||| || ||||| || || ||| Sbjct 98064815 CAGATCTTCGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTAGA--GCCCAGTG 98064758 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| || ||||| || || |||| || ||||||| Sbjct 98064757 ACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGCCTCCCACCTGACCAGC 98064698 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || |||||||| |||||||| || ||||| || || | ||||| ||| Sbjct 98064697 AGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTACAACA 98064638 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 98064637 TCCAGAAAGAGTCCACCTTGCACCTGGT 98064610 >seq10 Length=90668104 Score = 122 bits (134), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 177934 TGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGA 177991 |||| || || || || || || ||||| || ||||| || || ||| |||||||||| Sbjct 33660663 TGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTGACACCATCGA 33660606 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 ||| ||||| ||||| || ||||| ||||| |||||||| |||||||| | || || Sbjct 33660605 GAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGAT 33660546 Query 178052 CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||| | || |||||||| || ||||| | || || |||| || ||| |||| ||||| Sbjct 33660545 ATTCTCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGA 33660486 Query 178112 ATCAACACTGCATCTTGT 178129 || || |||| || || Sbjct 33660485 GTCCACCTTGCACCTGGT 33660468 >seq20 Length=148322235 Score = 114 bits (126), Expect = 3e-20 Identities = 161/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||| ||| || || || || || || |||||||| ||| Sbjct 135500561 AGGTCAAAATGC---AAATCTTCGAGAAGACCCTGACTGGCAAGACCATCACCCTAGAGA 135500505 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| | ||||||||||| || || ||||| ||||| ||||| || || Sbjct 135500504 TGGA--GCCCAGTGAAACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCAT 135500447 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 | | || |||||||| | || ||||| || || || || || |||||||| | || | Sbjct 135500446 CAC-CCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGCACCTT 135500388 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| ||| |||| ||||| | || ||||| || || Sbjct 135500387 CTCTGATTACAACATCCAGAAAGAGTTGACCCTGCACCTGGT 135500346 >seq12 Length=182815943 Score = 114 bits (126), Expect = 3e-20 Identities = 149/202 (74%), Gaps = 12/202 (6%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||| ||| || || || || || |||||||| || | Sbjct 121887292 AGGTCAAAATGC---AAATCTTCGAGAAGACCCTGACCAACAAGACCATCACCCTAGATG 121887348 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAA----G 178023 |||| || ||| |||||||||||||||| || ||||| ||||| |||||| | Sbjct 121887349 TGGA--GCCCAGTGACACCATCGAGAACGT-GAAGGCAAGATCCAGGATAAAGAAAGAGG 121887405 Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 | || || || ||||||||| | || ||||| || ||||| ||||| |||||||| | | Sbjct 121887406 GCATTCCCCCTGACCAGCAAAGGCTCATCTTTGCAGGAAAGCAGCTAGAAGATGGCTGCA 121887465 Query 178084 CTCTTGCCGATTATAACGTCCA 178105 | || | ||||| ||| |||| Sbjct 121887466 CCCTCTCTGATTACAACATCCA 121887487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203647855156376