Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 129 5e-25 seq15 116 3e-21 seq16 91.5 1e-13 >seq3 Length=125065471 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || ||||||||||| Sbjct 62144664 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGG 62144605 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||| | || ||| Sbjct 62144604 CCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 62144545 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 62144544 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 62144485 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| |||||||| || Sbjct 62144484 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 62144444 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || ||||| ||||| Sbjct 62144892 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGG 62144833 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||| | || ||| Sbjct 62144832 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 62144773 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 62144772 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 62144713 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| ||||| ||||||||| Sbjct 62144712 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 62144674 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||| ||| ||| ||||| ||||| || || || Sbjct 98064591 GCCACCTCGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGA 98064650 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| | | || || ||||| ||||||||||||||||| | ||| ||||| | || Sbjct 98064651 CAGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGG 98064710 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 98064711 GAGGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTAC 98064770 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||| |||| ||||| ||||| ||||||||||| Sbjct 98064771 CTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATGTT 98064821 >seq15 Length=152823684 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| || || || |||||||| | || || Sbjct 125084963 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCC 125085022 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || |||||||||| | Sbjct 125085023 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 125085082 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| || | ||| ||||||| || || || ||| Sbjct 125085083 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTA 125085142 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || |||||||| Sbjct 125085143 CCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq16 Length=150978388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740 ||||| || || ||||| ||||| | || || ||||||||||| || || ||||| | | Sbjct 58879370 ATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTC 58879429 Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTG 41800 || |||| | ||||| || ||| || ||| ||| || ||||| | | ||| Sbjct 58879430 TGCTGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGGTG 58879489 Query 41801 TCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860 || || | ||||||||| | || || || || || ||||| ||||| | || |||||| Sbjct 58879490 TCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCTGC 58879549 Query 41861 ATGTT 41865 || || Sbjct 58879550 ATTTT 58879554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462272771364800