Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5311 82.4 8e-11 >seq5311 Length=191600 Score = 82.4 bits (90), Expect = 8e-11 Identities = 203/304 (67%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 ||||| || || ||||| ||||| |||||||| |||| ||||| |||||||| | || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 17027 GGCATCTTTCCTCGTTT-CTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATAT 17085 |||||| ||| ||||| ||| | ||| ||||| | | || | ||| | ||||| || Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 17086 ACCCTCGACGGATGCAAACGCGATTAA-TCGTTCGGCGTACGTCGCGTCTTTGTTACGAA 17144 | || | | |||| || | || |||||| | || | || ||||||| | || Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 ||||| || | ||| | || || || | || | ||| ||| | || || || || | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCAA-CAAGGCATTATCTCAATAGCATTGA 42307 Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 | | || | | || | | || | || || | || ||||| || |||||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 17265 CGGA 17268 | || Sbjct 42368 CAGA 42371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515169793984560