Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15565 105 7e-18 seq5311 96.9 4e-15 >seq15565 Length=372695 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| ||||| ||||||||||| || | || ||||| ||| |||||||| Sbjct 366571 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366512 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||| | ||||| || || || ||||| || || || |||| ||||| || Sbjct 366511 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGGCC 366452 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | ||||| | || || || ||||| | | ||||| | | |||| ||||| Sbjct 366451 ACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGGCC 366392 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 || | ||| | |||| ||| || || || || || || Sbjct 366391 TTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAA 366354 >seq5311 Length=191600 Score = 96.9 bits (106), Expect = 4e-15 Identities = 210/308 (68%), Gaps = 11/308 (4%) Strand=Plus/Plus Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 |||||||| || |||| || || |||||||| |||| ||||||||||| || | || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 16265 GGCATTTTTCCTCG-TTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 ||||| ||| || |||||| | ||||||||| | |||| | || | ||||| || Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAA-TCGTTCCGCGTACGTAGCATCTTTATTACGAA 16382 | || ||| |||| || | || |||||| | || | ||| ||||| | | || Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA 16442 ||||| || | ||| | || || || | |||| |||| ||| | || || || || | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCT-TTTTCAACAAGGCATTATCTCAATAGCATTGA 42307 Query 16443 ACAATT----TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 | | || |||| || |||| ||| | || || | ||||| || | ||||||| Sbjct 42308 AGAGTTATACCCTCTCTT---TGAA-ATCTTTAATGTAACTGTCAATGAGGAGACTGTAC 42363 Query 16499 ATTTCTGA 16506 ||||| || Sbjct 42364 ATTTCAGA 42371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509066739411440