Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq9884 163 2e-35 seq1985 127 1e-24 seq9480 104 2e-17 >seq9884 Length=105558 Score = 163 bits (180), Expect = 2e-35 Identities = 296/427 (69%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 3978 CTTCTCATATACTTCAAATTTGTA--CTTAATAC--TTTTCTCTTCTTGCACATTAGAAA 4033 |||||| | ||||||| ||| || | |||| | ||||| || || | || | ||||| Sbjct 48774 CTTCTCCTGGACTTCAAGTTTATAGACATAATGCCGTTTTCCCTCCTGG-ACCTCAGAAA 48832 Query 4034 GAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGG 4093 | || | || ||||| | | |||||||| | | | ||||| |||||| |||| Sbjct 48833 GGACTCCTGTGCATTCTGGGAGATGTTTGTATCTTCCCAAATCAATTTCTGGGAAAACCA 48892 Query 4094 TGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAAC 4153 |||||| |||| | || ||||||||| | |||||| |||| | | | || | | Sbjct 48893 TGTCACTTTCAGATTCCTGCATGATCTTTGTCACA----GTTTGACGTGGTCTGACTGAT 48948 Query 4154 TCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTG 4213 |||| ||| | | | || ||||| |||| | |||| ||| ||||||||||||||| Sbjct 48949 TCATGGCTCCCTCGTGAAC-GAACTGCCTCTGGCTGTCCAAACCTTGTCTACTTTATTTG 49007 Query 4214 CTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAG 4273 |||||| || ||||| ||||||||||| |||| || | ||| || | | |||||||| Sbjct 49008 ATAATTCCGGTTGTTCAGTAAGTTTTAAGGCATTGTCCAGACTTTTGACAAGAAAATGAG 49067 Query 4274 CTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAG 4333 || ||||| | ||||| || || |||||||| | | ||||||| |||| Sbjct 49068 TTCCTTGTGGTGGTTCCTTGAGGTCTCCCCTGAGAACTATGTGAATTCTGTTCTTTACCA 49127 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCA--TAATCACTAAATTCTG 4391 | | || | ||||||||| |||| ||| | ||| |||| | |||| | ||||| Sbjct 49128 GTCCATTTTCCTCAGGAATGGAGATCCAGG----TTTCCCCACCTGTTCACCAGGTTCTG 49183 Query 4392 TTTATCT 4398 |||| || Sbjct 49184 TTTACCT 49190 >seq1985 Length=848755 Score = 127 bits (140), Expect = 1e-24 Identities = 110/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 ||||||| || | | || || || ||||| ||||||| |||||| |||||||||||||| Sbjct 220600 ATAACTC-TACTTACCTTGTAAACGGAACTGCCTCCAACTATCCAAACCATGTCTACTTT 220542 Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268 ||||||||| ||||| ||||| ||||||||| |||||||| | ||| || || | ||| Sbjct 220541 ATTTGCTAACTCTGGTTGTTCAATAAGTTTTAGGGCATCATCCAGACTTTTGGCAAGAAA 220482 Query 4269 ATGAGCTCTATGTGG 4283 |||||||| ||||| Sbjct 220481 ATGAGCTCCTTGTGG 220467 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | ||| |||||| |||||||||| || ||||||||||| Sbjct 212393 CTTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGG 212334 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | ||||||||| || Sbjct 212333 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 212285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||| || |||||| | | ||| | |||||| || || ||||||| |||||| |||||||| Sbjct 223910 AAGCTTATATTTCCCCAAATCGATTTCTGGGAAGAACGTGTCACTTTCAAATTCTTGCAT 223851 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| || | || ||| | |||| || ||| | || ||| ||||| || | ||| | Sbjct 223850 GATCCTTGTTATGAAGAGTCTGAGATGGCCTGGCTGACCCATGGCTTCCTTTGAAACAAA 223791 Query 4176 AC 4177 || Sbjct 223790 AC 223789 >seq9480 Length=267638 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | || | | | || |||| | ||||| |||||||| ||| ||| |||||||| Sbjct 95377 TTAGGCCACGTGGCGGACTATGGAGGACACGCAGGTGCAGCCCACACCCACCAGCATCTT 95436 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 || | || || || |||||| | | || | | | || || || |||||||| Sbjct 95437 ATCCACCCGGAAGGAGAAGGGGCAGTTCTCAGGCTCCCTCCTCAGGACCAGGATCTCTTG 95496 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 |||| | || ||||||||||||| || | ||||| | |||||| ||||| | Sbjct 95497 CTGGAGGAGAACAGAGTTCATGTGGTGCTCCAACTTCCCCTGAGCATTGACACAGCGCTG 95556 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| |||||||| |||||||| | | || || ||||| Sbjct 95557 GTGGCGGCACTGTGCCTCCCAGATCACAGAAGGATATCTGTTAGGGTCCTCGTTGCG 95613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359634325651742