Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq53675 260 2e-64 seq303837 141 1e-28 seq7033 131 2e-25 seq21860 118 1e-21 >seq53675 Length=35847 Score = 260 bits (288), Expect = 2e-64 Identities = 581/862 (67%), Gaps = 15/862 (2%) Strand=Plus/Minus Query 176395 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 176454 ||||||| || | || ||| | || |||||| |||| |||| || ||| | ||| Sbjct 9028 TGGGCAACATGGTGGTTGTGCTGATCCTCATAAAGTACAGGAAGCTCCAAATTATGGCTA 8969 Query 176455 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 176514 | || | ||| | ||||||||||| |||||| |||| ||||| || || | ||||| | Sbjct 8968 ATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTCTTTCTCTTCACCGTTCCATTCT 8909 Query 176515 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 176574 |||| |||||| || |||| |||| ||| |||||| | | |||||||| || Sbjct 8908 GGATTCACTATGTT---ATGTGGAATGAATGGGGTTTTGGCCATCACATGTGTAAAGTGA 8852 Query 176575 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 176634 || || | | |||| | | ||||||| || |||||| ||||||||| || ||| Sbjct 8851 TCTCTGGGTTTTATTACCTTGCCTTGTACAGTGAGATCTTTTTCATCATCCTACTGACAA 8792 Query 176635 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 176694 | || ||||| || || ||||| ||||||| ||| | || | || || || | Sbjct 8791 TTGATAGGTACCTGGCCATTGTCCATGCTGTGTTTGCCCTTAGAACCCGGACTGTGACTT 8732 Query 176695 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAAT 176754 || | | ||| | | |||||| |||||||||| || | ||||||||| Sbjct 8731 TTGCTACCATCACCAGCATCATCACCTGGGCTCTGGCAGGGCTGGCCGCATTCCCTGAAT 8672 Query 176755 TTTTCTTTCATGGACACCAAGATGACAATGGTAGGG---TTCAGTGTGATCCTTACTACC 176811 || |||| ||| |||||| || || | || | ||| || | |||| | |||| Sbjct 8671 TTATCTTCTATGAGTCCCAAGACAAC-ATTGAAGAGCATTTC--TGCGGTCCTCATTACC 8615 Query 176812 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 176870 |||| | || | || | |||| ||| ||| | | | ||| ||| || || Sbjct 8614 CAGA-AGGTGAAGAAGACAGCTGGAAGCGTTTCCATGCTCTGAGAATGAATATCTTTGGT 8556 Query 176871 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 176930 || | | ||||| |||||||||| | ||||||||| | ||| || | || ||| || Sbjct 8555 CTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTACTCAGGAATCATTAAAACTCTGCTG 8496 Query 176931 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 176990 | |||||| || || ||| ||||||||||| |||| || ||||| ||||| | | | Sbjct 8495 AAATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCTTATTTTTGTTGTCATGATAGTC 8436 Query 176991 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCAC-GCAAC 177049 | |||| |||||||||| || |||||| | ||||| || || ||| | |||||| ||| Sbjct 8435 TTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTTCTTCTCTCTGCTTTTCACAGCA-- 8378 Query 177050 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 177108 | || || ||| ||| | ||||| || ||||| |||| || | | || Sbjct 8377 CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTGGACCTGGCCAGGCAGGTGACTG 8318 Query 177109 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 177168 | | |||||||| ||||| || ||||||||| | ||||| || || || || |||| Sbjct 8317 AGGTGATTGCCTACACCCACTGCTGTATCAACCCAATCATCTATGCCTTTGTTGGTGAGA 8258 Query 177169 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGT 177228 ||| | | |||||| | || |||||| ||||| | |||||||| | || | Sbjct 8257 GGTTCCGGAAACACCTTCGGCTTTTTTTCCACCGACACGTGACAATCTACCTGGGGAAAT 8198 Query 177229 ACATCCCCTTCCTGTCTGGTGA 177250 | || || ||||| ||||||| Sbjct 8197 ATATTCCATTCCTTCCTGGTGA 8176 Score = 260 bits (288), Expect = 2e-64 Identities = 581/862 (67%), Gaps = 15/862 (2%) Strand=Plus/Minus Query 9509 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 9568 ||||||| || | || ||| | || |||||| |||| |||| || ||| | ||| Sbjct 9028 TGGGCAACATGGTGGTTGTGCTGATCCTCATAAAGTACAGGAAGCTCCAAATTATGGCTA 8969 Query 9569 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 9628 | || | ||| | ||||||||||| |||||| |||| ||||| || || | ||||| | Sbjct 8968 ATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTCTTTCTCTTCACCGTTCCATTCT 8909 Query 9629 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 9688 |||| |||||| || |||| |||| ||| |||||| | | |||||||| || Sbjct 8908 GGATTCACTATGTT---ATGTGGAATGAATGGGGTTTTGGCCATCACATGTGTAAAGTGA 8852 Query 9689 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 9748 || || | | |||| | | ||||||| || |||||| ||||||||| || ||| Sbjct 8851 TCTCTGGGTTTTATTACCTTGCCTTGTACAGTGAGATCTTTTTCATCATCCTACTGACAA 8792 Query 9749 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 9808 | || ||||| || || ||||| ||||||| ||| | || | || || || | Sbjct 8791 TTGATAGGTACCTGGCCATTGTCCATGCTGTGTTTGCCCTTAGAACCCGGACTGTGACTT 8732 Query 9809 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAAT 9868 || | | ||| | | |||||| |||||||||| || | ||||||||| Sbjct 8731 TTGCTACCATCACCAGCATCATCACCTGGGCTCTGGCAGGGCTGGCCGCATTCCCTGAAT 8672 Query 9869 TTTTCTTTCATGGACACCAAGATGACAATGGTAGGG---TTCAGTGTGATCCTTACTACC 9925 || |||| ||| |||||| || || | || | ||| || | |||| | |||| Sbjct 8671 TTATCTTCTATGAGTCCCAAGACAAC-ATTGAAGAGCATTTC--TGCGGTCCTCATTACC 8615 Query 9926 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 9984 |||| | || | || | |||| ||| ||| | | | ||| ||| || || Sbjct 8614 CAGA-AGGTGAAGAAGACAGCTGGAAGCGTTTCCATGCTCTGAGAATGAATATCTTTGGT 8556 Query 9985 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 10044 || | | ||||| |||||||||| | ||||||||| | ||| || | || ||| || Sbjct 8555 CTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTACTCAGGAATCATTAAAACTCTGCTG 8496 Query 10045 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 10104 | |||||| || || ||| ||||||||||| |||| || ||||| ||||| | | | Sbjct 8495 AAATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCTTATTTTTGTTGTCATGATAGTC 8436 Query 10105 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCAC-GCAAC 10163 | |||| |||||||||| || |||||| | ||||| || || ||| | |||||| ||| Sbjct 8435 TTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTTCTTCTCTCTGCTTTTCACAGCA-- 8378 Query 10164 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 10222 | || || ||| ||| | ||||| || ||||| |||| || | | || Sbjct 8377 CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTGGACCTGGCCAGGCAGGTGACTG 8318 Query 10223 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 10282 | | |||||||| ||||| || ||||||||| | ||||| || || || || |||| Sbjct 8317 AGGTGATTGCCTACACCCACTGCTGTATCAACCCAATCATCTATGCCTTTGTTGGTGAGA 8258 Query 10283 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGT 10342 ||| | | |||||| | || |||||| ||||| | |||||||| | || | Sbjct 8257 GGTTCCGGAAACACCTTCGGCTTTTTTTCCACCGACACGTGACAATCTACCTGGGGAAAT 8198 Query 10343 ACATCCCCTTCCTGTCTGGTGA 10364 | || || ||||| ||||||| Sbjct 8197 ATATTCCATTCCTTCCTGGTGA 8176 >seq303837 Length=344 Score = 141 bits (156), Expect = 1e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||| |||||||| |||||||||||| Sbjct 84 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 143 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||| || || || | |||||| |||||||| || |||||||| ||| Sbjct 144 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCT 203 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||| || || ||| ||||| || ||||| ||||| Sbjct 204 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 244 >seq7033 Length=464768 Score = 131 bits (144), Expect = 2e-25 Identities = 125/159 (79%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 |||||| |||| | ||||||||| || ||||| || ||||||||||||| | ||| Sbjct 230610 CAGCGCTGCAGCTGCCTCCTGAGGGTCTTCAGCTTCTCTCCCAGGGAGTTCAAATGCTCC 230551 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || || |||| || |||||||| ||||||||||||||||| |||||||||||| Sbjct 230550 TTGATTTCTGG-----GCCATGGTTCTCTGCCTGGGGCATCACCTCTACCAGGTAAAACT 230496 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||| || |||| || ||||| |||| |||||||| Sbjct 230495 GGATCATTTCTGACAAGGTTTGGCAACCCAAGTAACCCT 230457 Score = 105 bits (116), Expect = 8e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 || |||||||||| |||||||||| | |||||| |||| ||||||||||||||||| Sbjct 232956 AGCTTTTCATCTTGATGGTCATGTATTCTTCTATGCAGTTGATGAAGATGTCAAACTCAT 232897 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||||| ||||| ||||| || ||||||| Sbjct 232896 TCATGGCCTTATAGACACCTTTCTCTTGGAGCT 232864 >seq21860 Length=96554 Score = 118 bits (130), Expect = 1e-21 Identities = 175/242 (72%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 56453 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 56394 Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTT----CTTA- 177057 ||||||||||||||||||||| || | ||| |||||| || | || ||| || | Sbjct 56393 TGGACACCCTACAACATTGTTGTCTTCCTGAATACCTTCCA-GGAATTCTTGGGACTGAG 56335 Query 177058 -ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 177116 ||||| | || ||| | || | |||| ||| ||| ||| | | ||| | || | Sbjct 56334 TACCTGTA-TG---ATT-ACCAATCACTTAGACCAGGCCATGCAGGTGACAGAGACTCTT 56280 Query 177117 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGA 177176 | |||||||| ||||||||||| || ||||| || || || ||||||||||| || Sbjct 56279 GGAATGACACACTGCTGCATCAACCCTGTCATCTATGCCTTTGTTGGGGAGAAGTTCCGA 56220 Query 177177 AG 177178 || Sbjct 56219 AG 56218 Score = 118 bits (130), Expect = 1e-21 Identities = 175/242 (72%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 56453 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 56394 Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTT----CTTA- 10171 ||||||||||||||||||||| || | ||| |||||| || | || ||| || | Sbjct 56393 TGGACACCCTACAACATTGTTGTCTTCCTGAATACCTTCCA-GGAATTCTTGGGACTGAG 56335 Query 10172 -ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 10230 ||||| | || ||| | || | |||| ||| ||| ||| | | ||| | || | Sbjct 56334 TACCTGTA-TG---ATT-ACCAATCACTTAGACCAGGCCATGCAGGTGACAGAGACTCTT 56280 Query 10231 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGA 10290 | |||||||| ||||||||||| || ||||| || || || ||||||||||| || Sbjct 56279 GGAATGACACACTGCTGCATCAACCCTGTCATCTATGCCTTTGTTGGGGAGAAGTTCCGA 56220 Query 10291 AG 10292 || Sbjct 56219 AG 56218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002 ||||||| | ||||||| | ||||||||||||| ||| ||| | ||| ||| |||| Sbjct 44276 AAGAAGAGGCACAAGGCTGTGAGGCTCATCTTTGCCATTATGATTATCTACTTTATTTTC 44217 Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043 |||||||||||||||||||| || || ||| ||||| || Sbjct 44216 TGGACACCCTACAACATTGTCCTTCTTCTGCACACCTTCCA 44176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116 ||||||| | ||||||| | ||||||||||||| ||| ||| | ||| ||| |||| Sbjct 44276 AAGAAGAGGCACAAGGCTGTGAGGCTCATCTTTGCCATTATGATTATCTACTTTATTTTC 44217 Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157 |||||||||||||||||||| || || ||| ||||| || Sbjct 44216 TGGACACCCTACAACATTGTCCTTCTTCTGCACACCTTCCA 44176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587368037697680