Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq15796 223 4e-53 seq601 199 5e-46 seq13748 91.5 2e-13 >seq15796 Length=599379 Score = 223 bits (246), Expect = 4e-53 Identities = 266/361 (74%), Gaps = 0/361 (0%) Strand=Plus/Minus Query 83033 TAGTAGCCGCGCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTC 83092 ||| |||||| | || ||| |||||||| || ||||| || || | | | | ||| Sbjct 511619 TAGGAGCCGCTAGGCTGCTGGGACAGCAGGGCTTCTATGTCAGGTTCGATGTCGATGGTG 511560 Query 83093 TGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCG 83152 | ||||| |||||||||||||||| || |||||| | ||||||| |||||||||| Sbjct 511559 CGAAAGCGGCGGCTGTACCTGCGCACTGGAACGCCGTCCGGTCCCACCAGGAACTTCTCG 511500 Query 83153 AAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTC 83212 || |||||||| | ||||||||||||||| |||||||| ||| || ||||||| || Sbjct 511499 AAATTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCGGTC 511440 Query 83213 ACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272 | ||||| | ||||| || ||||| |||| | |||||| ||||| | |||||| Sbjct 511439 ATGAGCGCAGTGGGCTCGTCACTGGGCGCTGGCAAAGACTCTCGCAGGAAAGTAAAGAGC 511380 Query 83273 GGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAG 83332 || || ||| | | || || |||||||| |||||||| | ||||||| |||||||| Sbjct 511379 GGGTGAGCCTTCTCGCCATTCACCTCGCATTTCTCGAACAATGTAAAGTTGGGCTCGAAC 511320 Query 83333 CCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCC 83392 || ||||| |||| | ||| |||||| || ||||| | |||| ||| || ||| Sbjct 511319 CCCCCACCAGGTCGGATATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCC 511260 Query 83393 T 83393 | Sbjct 511259 T 511259 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || || || ||||| || || | || |||| Sbjct 511044 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGAACCACCAGGCCTCGGGGCCCGAGGC 510985 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| || ||||||| ||||| |||||| ||| | ||||||||||| || | Sbjct 510984 GTCTCTGCAGATCATTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGATGCGA 510925 Query 83511 CGTTCTCGAT 83520 | ||||| || Sbjct 510924 CATTCTCAAT 510915 >seq601 Length=1637764 Score = 199 bits (220), Expect = 5e-46 Identities = 362/523 (69%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| |||||||| || ||||| | || | | | | || | || || |||| | Sbjct 322487 GCTGGGACAGCAGGGCTTCTATGTCAGATTCGATGTCGATTGTGCGAAAG-GGCGGCTAT 322545 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||||||||| || ||||| ||||||| ||||||||||||||||||||| |||| Sbjct 322546 ACCTGCGCACTGGAACACCGTCCAGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACGT 322605 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 | || ||||||| ||||||| ||| || |||| | ||| |||| | | Sbjct 322606 CACTGAGGCACACCAGAGACCAAATAATACACTTGGGGAGGATCATGAGCACAGTGGGAT 322665 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 |||| || || || |||| | ||| | ||||||| |||||| | || ||| | ||| Sbjct 322666 CGTCACTGGGAGCTGGCAAAGACTCCAGCAGGAAGGGAAAGAGCAGGTGAGCCTTCTCAC 322725 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTC----CCAGGA 83344 | || |||| ||||||| ||| | ||||||| | | | | || | ||||| Sbjct 322726 CATTCGCCTCACACTTCTAGAACAATGTAAAGTTGGATTTGGAACCCCCCCCCACCAGGT 322785 Query 83345 CGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAAC 83404 |||| | ||| |||||| || ||| | | |||| ||| || ||||| | ||| ||| Sbjct 322786 CGGATCTACTTGAGGGAATTCAGAATCCCTTCGTTCTTGGCATTCTCCTGATAACCAAAC 322845 Query 83405 TGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCG 83464 || || |||||| || ||||| | ||| || | || || ||| | | |||||| || Sbjct 322846 TGATTGTCCGGGAAACCGAGCACCATCAGGCCAC-AGGCCCGAGGTGTCTCTGCAGATCT 322904 Query 83465 TTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGC 83524 ||||||| |||||| |||| | ||| | |||| ||||| | || ||| | | |||| Sbjct 322905 TTCATCTCAGTGTAGTCCCAGGTCGTTGTGCCTC--AGGGATG-AACATTCCCAAGGAGC 322961 Query 83525 AAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGG-TTCTCCT 83566 | ||| |||||| | | |||| | ||||||||| ||||||| Sbjct 322962 AGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTTCTCCT 323004 >seq13748 Length=543502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||| ||| || | ||||||| | || | ||| || Sbjct 479955 GATGTCTGGCTCTATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGACGGAATGGCTCCCC 480014 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | ||| | | ||||||||| |||||||||||||| || ||||| ||| ||| Sbjct 480015 TTCTGGACCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACCGGACT 480074 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| ||| ||| ||| | | ||| || ||| ||||| Sbjct 480075 CCACATGATGAGCTTGGGATCGGTCATGAGGGAGAAGGGGTCATCATAAGGGTAGGGCAG 480134 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| | | ||| ||||||||||| ||||| | Sbjct 480135 CTTGTCTTTCAGGTAGGCAAAGACTGGATGCTCGTTCTGC-CCGTTGACCTCACACTTTT 480193 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | || | ||| | |||| | | || |||||| ||||| | ||| ||| || Sbjct 480194 GGGTAAGACTGAAGGTGGGCTGGTACCCACCCCCAGGGCGGACATACTTGAGGCTGTTCA 480253 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| ||||||| ||| |||||| Sbjct 480254 GGATCTCCTCATTCTGACAGTTCTCCTGG 480282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606002103069680