Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9155 122 7e-23 seq77463 102 7e-17 seq11124 100 2e-16 >seq9155 Length=358325 Score = 122 bits (134), Expect = 7e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 20956 GCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTT 21015 |||| | ||||||| |||||||||| ||| || || ||||| | ||| | |||||| | Sbjct 307806 GCAGACGAAGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCT 307747 Query 21016 GGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTT 21075 || | ||||||||||| ||||| ||| | || ||||| |||||||| || | ||||| Sbjct 307746 GGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTT 307687 Query 21076 CCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGG 21135 ||||||| |||||| || || | | | || |||| ||||| || | | Sbjct 307686 CCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAG 307627 Query 21136 TAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||||||| || | || || ||||| || ||||| Sbjct 307626 TAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq77463 Length=3863 Score = 102 bits (112), Expect = 7e-17 Identities = 161/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| |||||||| || || || || || || | || || ||| | || Sbjct 247 GAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATC 306 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC-ACGCCTTCCTTGT 21081 |||| |||||| || ||| | || |||| ||||||||| | |||| | | | || || | Sbjct 307 TTCCAACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTC-AGGGGCGATGTCCTCTTTAT 365 Query 21082 CGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGG 21141 | |||||| || || | | | || |||| ||| ||| |||| || |||| Sbjct 366 CCTGGATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGG 425 Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTTA 21188 ||||||| |||| || || ||||| |||||||||||| |||| ||| Sbjct 426 TCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTTG-ATCTGTTA 471 >seq11124 Length=316893 Score = 100 bits (110), Expect = 2e-16 Identities = 158/225 (70%), Gaps = 11/225 (5%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| ||| |||||||||| ||||| || || | || || ||| | || Sbjct 73974 GAGGACCAGGTGCAGGGTGAACTCCTTTTGCATGTTGTAATCAGAAAGAGTGTGGTCATC 73915 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG-----GGCAC--GCCTT 21075 |||||||| ||||| ||| |||| |||| |||||| || | |||| ||| | Sbjct 73914 TTCCAGCTGCTTGCCTGCAAAAATGAGTCCCTGCTGCTCTGTGTATGGGGCATATGCCCT 73855 Query 21076 CCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGG 21135 | | || || ||| | |||||| || | || |||| ||| || | || | || Sbjct 73854 CTTAATCCTGGACCTTGTCTTTCACGTG----ATGGTGTCACTGGGTTCTGCCTCTAGGG 73799 Query 21136 TAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | ||||||||||| || || || || ||||| |||||| |||||| Sbjct 73798 TGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCCTTTTGA 73754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420369268371272