Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15565 154 2e-32 seq77463 122 9e-23 seq9155 104 2e-17 seq8072 104 2e-17 seq53448 84.2 2e-11 >seq15565 Length=372695 Score = 154 bits (170), Expect = 2e-32 Identities = 175/234 (75%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || || || ||||| ||||| || || ||| |||||||||| ||||| ||||||||| Sbjct 366354 TTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCGACTGGGCCCTGCGCTGG 366413 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 |||| | || ||||||| ||| || || || | |||||||| || || || || || Sbjct 366414 ATCGGGGACAAAGAGGCCACCTATGGAGAACGGGTTGTGGCCTTTGCTGCTGTGGAAGGG 366473 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || ||| ||| || | ||||| |||||||||||||| || || ||||| Sbjct 366474 ATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCTCAAGAAACGGGGACTGATGCCT 366533 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG---GTCTGCATTGC 117178 ||||| || || ||||||||| || ||| || |||| ||||| | ||| Sbjct 366534 GGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATGAGGTGAGTCTGAAATGC 366587 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| | || || |||||||| ||||| || || ||||| |||||| || Sbjct 363680 GAGCCCTTGCTGAGAGAAAATCCCCGCCGCTTCGTTATCTTTCCCATCGAATACCATGAT 363739 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || ||||||| || |||||||| | |||||||||||||| Sbjct 363740 ATCTGGCAGATGTACAAGAAAACCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCTT 363799 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||||| |||||| ||||| |||| | ||||| | ||||| || || Sbjct 363800 TCCAAGGACATTCAACACTGGGAAGCGC-TGAAACCCGACGAGAGACATTTTATATCTCA 363858 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||| ||||| || || || || || || ||||| || || || || ||||| Sbjct 363859 CGTCCTGGCTTTCTTTGCGGCGAGTGATGGCATAGTTAATGAAAACCTGGT 363909 >seq77463 Length=3863 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || || || || || ||||| |||||||| | || || || || Sbjct 462 AAAATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACACTGGAGGTGGATCCC 403 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | || | | |||||| || || | || ||||||| |||| || | ||| Sbjct 402 AGTGACACCATGGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCGCCCCTGAC 343 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||||||| || || |||||| |||| || | | ||| ||| || ||| Sbjct 342 CAGCAGTGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGCCACACTCTCTCTGATTAC 283 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| ||| |||| ||||| || || Sbjct 282 AATATCCAGAAAGAGTCCACCCTGCACCTGGT 251 >seq9155 Length=358325 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||| || | || ||| | ||| Sbjct 307587 ATGCATATCTTTGTGAAGACCCTGACGGGCAAGACCATTACTCTTGAGGTCAAGCCCAGT 307646 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || |||||||| | |||||| Sbjct 307647 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 307706 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| || | || ||||| |||||||| || | | ||||| ||| ||||| Sbjct 307707 CAAAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCAGACCCTGTCTGACCACAAC 307766 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||| ||| |||| |||| || ||| Sbjct 307767 ATCCAGAAAGAGCCCACTTTGCACCTGGTG 307796 >seq8072 Length=1211495 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| |||||||||||| |||| || ||| || Sbjct 11492 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTCGAGGTTGAACCCTTG 11551 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || || | || || || || || || | || ||| Sbjct 11552 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAG 11611 Query 40810 CAACGACTCATCTA-CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || |||| ||| ||||| |||||||| || | || || | |||||||| Sbjct 11612 CAGAGGCTGATCTTGCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 11671 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| |||||| |||| || ||||| |||||| Sbjct 11672 CATCCCAAAGGAGTCCACCCTTCATCTGGTGTTG 11705 >seq53448 Length=237101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||| || ||||| || ||||| ||||| || || || || || || || | Sbjct 207138 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCCTTTGCTGCTATCTTCT 207197 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | |||||||||||||| || |||||| || || || ||| ||||| Sbjct 207198 GGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCAAATGAACTGATCAGCAGGG 207257 Query 117162 ACGA 117165 | || Sbjct 207258 ATGA 207261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512854073381920