Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8072 104 2e-17 >seq8072 Length=1211495 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | ||||||||||| || | || ||||| ||| | |||||||| || Sbjct 11720 ACCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGA 11661 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG-TAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || ||| || ||||| || |||||| |||| || | |||||| || |||| Sbjct 11660 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAG 11601 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || || || || || | ||| | |||||| | || | Sbjct 11600 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAA 11541 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | ||||| || || || || || || ||||||||||| Sbjct 11540 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431888678435464