Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq701 1151 0.0 seq6848 127 1e-24 seq6837 107 1e-18 >seq701 Length=656386 Score = 1151 bits (1276), Expect = 0.0 Identities = 1043/1307 (80%), Gaps = 12/1307 (1%) Strand=Plus/Plus Query 107336 GAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGT 107395 |||||| || || | ||||| ||||| ||||||||||||| |||||||||||||| | Sbjct 65787 GAAGCTCTGTTGGCGCTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCCGTCAT 65846 Query 107396 TTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAG 107455 | |||||| ||| |||||||| | || ||||| | ||| | |||||||| | || | Sbjct 65847 TGCTCTGAAACTGTCCCTCAGACTGAAGTGTGACTTTGATGGCGTGGATCTGAACTCGAA 65906 Query 107456 GGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAA 107515 ||| || || || |||||||| ||||| | ||||||| | |||||||||||||||| | Sbjct 65907 GGAATTTCAAAGCCAGCACTGCAGGGATTTCCTGTACAAGACCCTGAAGCTGCCAGCAGA 65966 Query 107516 GAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCT 107575 ||| ||||||||||||||||| |||| |||||||| | | |||||||| ||||||| || Sbjct 65967 GAGGCCCATCAACTGTTCTGGGGTCACTCGAGGGGAGCCGAAAGCAGTGATCCAGGCTCT 66026 Query 107576 CCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAA 107635 || | |||||||| | ||||| |||||| ||| |||| | | || || | Sbjct 66027 GCTGAATAACCTGGAGCTTAAGAAGAAGCGGCAGCCCTTCACAGAGGTGGACTATCTTAG 66086 Query 107636 CATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAG 107695 ||| || ||||||||||| |||||| || |||||||||||||||||||| ||||||| Sbjct 66087 CATGACAGCAGACTGTGAGCAATTCAAGACCAAAAGGAAGTTCATACAGTTCTCACTGAG 66146 Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||||| |||||||||||||| || || |||||||| || |||||||| || || Sbjct 66147 TAAAGAAGAGGCCGACTTCCCCATTGCGTATTCCATGGTGGTTCACGAGAAGATCGAGAA 66206 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 66207 CTTTGAAAGGCTGCTGCGAGCTGTGTACACCCCTCAAAACATATACTGTGTCCACGTGGA 66266 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 | |||||||||||| |||||||| |||| |||| ||||||| | || |||||||| || Sbjct 66267 TCAGAAGTCCCCAGAAACTTTCAAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCCAAA 66326 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGC 107935 |||||| || || |||||| || | | ||||| ||||| ||||||||||| ||||| || Sbjct 66327 TGTCTTTATAGCTAGTAAGCTGCTGTCAGTGGTCTATGCTTCCTGGTCCAGGGTGCAGGC 66386 Query 107936 TGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 |||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| | ||||| Sbjct 66387 TGACCTGAACTGCATGGAAGACTTACTCCAGAGCCCCGTGCCATGGAAATACCTCCTGAA 66446 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGAT 108055 || || ||||||||||| ||||| ||||||||||| |||||||||| |||||||||| | Sbjct 66447 CACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCCAGGCCCTCAAGCT 66506 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa----TC 108111 ||||| || |||| ||||||||||| |||||||| | ||| | |||| | Sbjct 66507 ATTGAATGGGCAGAATAGTATGGAGTCAGAGGTACCACC----CCCACATAAAAGGTCCC 66562 Query 108112 GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGAC- 108170 ||||||| || | ||||||||||| ||||||| || || |||||||||| ||| ||| Sbjct 66563 GCTGGAAGTATCACTATGAGGTGAAAGACACATTGCACATAACCAGCAAGA-GAAAGACT 66621 Query 108171 CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCC 108230 ||||| ||| |||| || ||||||| || ||||||||||| | ||||| ||||||| | Sbjct 66622 CCTCCGCCTAATAACATAACCATGTTTACTGGGAATGCCTACATGGTGGCTTCTCGAGAC 66681 Query 108231 TTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGAC 108290 || | ||||||| ||| ||||| ||||| ||||| ||| | ||||||| |||||| Sbjct 66682 TTCATTGAACATGTATTAAACAACGCTAAAGCCCAACAACTAATCGAATGGGCAAAAGAC 66741 Query 108291 ACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGC 108350 ||||| || || || || ||||| ||||||||||| |||||||| | ||||||||||| Sbjct 66742 ACCTACAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCCTGGATGCCTGGA 66801 Query 108351 TCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTC 108410 || | ||| |||| ||| | | || |||||||||||| || || || ||||| | Sbjct 66802 TCAGCTCCCTTGCACCACAAATTTGACCTCTCAGACATGAGAGCTATTGCAAGGCTAACC 66861 Query 108411 AAGTGGCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGG 108469 ||||||||| |||| |||||||| | || || ||||||||||| |||| || || || Sbjct 66862 AAGTGGCAGGACCATGAGGGAGACATTGAGAAT-GGGGCGCCTTACACACCTTGTTCAGG 66920 Query 108470 AATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAA 108529 | |||| | | |||| |||| ||||| ||| | ||||||||| ||||||| || ||||| Sbjct 66921 AGTCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATACTTCAGAA 66980 Query 108530 CCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTT 108589 ||||||||||||||| |||||||||||||| | |||||||||||| || || ||||| || Sbjct 66981 CCATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTT 67040 Query 108590 AGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 ||| || || ||||||| || |||||||| ||||||||||| |||| Sbjct 67041 AGAGGAATATTTACGTCACAAAGCCATCTACGGGACTGAACTCTGAG 67087 >seq6848 Length=162012 Score = 127 bits (140), Expect = 1e-24 Identities = 236/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || |||||||| || ||| ||||||| || || || ||||| || ||||| ||| | ||| Sbjct 128980 CCCCTGAGTAAGGAGGAGGTAGACTTTCCAATCGCGTACTCCATAGTGGTTCATCACAAG 128921 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 128920 ATTGAAATGCTTGAGAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTTTATTGCATT 128861 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || | ||| | || || ||||| | || |||| |||||| Sbjct 128860 CACGTGGACAAAAAAGCAGAGGAGCCCTTTTTAGCTGCGGTAACGGGCATTGCGTCCTGC 128801 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || ||||| ||||||| || ||| || || ||||| |||||| | Sbjct 128800 TTGAAGAACGTCTTTGTGGCCAGCCAGCTGGAGAACGTCGTCTATGCGTCCTGGAGTCGG 128741 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | |||||| | ||| | ||||| | ||||||| Sbjct 128740 GTTCAGGCTGACCTCAACTGCATGAAGGACTTG-TACAGCA-TGAGTGCAAACTGGAAGT 128683 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 |||| | || ||||| | |||||||| || || ||||| Sbjct 128682 ACTTGATCAACCTCTGCGGTATGGACTTCCCTATTAAAACCAA 128640 Score = 107 bits (118), Expect = 1e-18 Identities = 177/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 108310 ACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC 108368 |||||||||||||| | || | | ||| || | | ||||| ||| | || || | || Sbjct 128219 ACCTCTGGGCCACCATCCAAAG-GATCCCTGAAGTCCCTGGTTCTCTCCCG-GCAAGCCA 128162 Query 108369 -AAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA 108427 |||||| || | || ||||||| ||| |||| ||| | ||||||||||||||| || Sbjct 128161 TAAGTATGACTTGTCCGACATGAATGCTGTCGCTAGGTTTGTCAAGTGGCAGTACTTTGA 128102 Query 108428 GGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCAT 108487 || ||||| || || || ||||| |||| ||| |||| |||| | | || | Sbjct 128101 AGGGGATGTTTCCAAAGGCGCTCCTTACCCACCGTGCAGTGGAGTCCACGTGCGCTCCGT 128042 Query 108488 CTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAA 108547 ||| ||| ||| || || ||| || |||||| || | || || ||| |||| || || Sbjct 128041 GTGCGTTTTCGGAGCTGGTGACTTGAGCTGGATGCTTCGCAAACACCACTTCTTCGCCAA 127982 Query 108548 CAAGTTTGAC 108557 ||||||||| Sbjct 127981 TAAGTTTGAC 127972 >seq6837 Length=485893 Score = 107 bits (118), Expect = 1e-18 Identities = 199/286 (70%), Gaps = 12/286 (4%) Strand=Plus/Plus Query 107749 TTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGT 107806 |||| | ||||||| |||| | | || | || |||||| ||||| | |||||||| Sbjct 388193 TTGACACCTTTGAAAGGCTCTTCAGGGCGATTTACATGCCCC--AGAACGTCTACTGTGT 388250 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CT 107865 ||||||||| |||| | |||||||||| ||||| || ||| ||| ||| | || Sbjct 388251 GCACGTGGATAAGAAGGCGTCAGAGACTTTTAAAGATGCCGTCC-GGCAGTTACTAAGCT 388309 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 |||||||||||| |||| ||||| |||| | | ||||| ||||| | ||| Sbjct 388310 GCTTCCCCAATGCCTTCCTGGCCTCTAAGACAGAGGCCGTGGTCTATGCTGGTTTCTCCC 388369 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGA 107982 | | || || ||||||||||| |||||| | || | | ||| ||| || |||| Sbjct 388370 GGCTCCAGGCAGACCTGAACTGCATGGAAAATCTGGT---GGCCTCTGAAGTCCCCTGGA 388426 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||| | || || || |||||| ||||| ||| | || ||||| Sbjct 388427 AGTTTGTCCTCAACACCTGCGGGCAGGACTTTCCCCTGAAAACCAA 388472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346710031782708