Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9155 93.3 3e-14 seq77463 82.4 6e-11 >seq9155 Length=358325 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGT---TGGCGATCGTCG 45184 |||| ||||| ||| ||| ||||| ||||||| ||| ||| |||| ||| || Sbjct 307795 ACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCCTC- 307737 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||| || || ||||| ||||||| | || ||||| || || | || |||||||| Sbjct 307736 --CAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 307679 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | |||| | || ||||| | ||||| ||| Sbjct 307678 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGTC 307619 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||||||||| |||||||||||||| |||||| || Sbjct 307618 TTGCCCGTCAGGGTCTTCACAAAGATATGCATGCTG 307583 >seq77463 Length=3863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| || ||||| || || | | | || ||| Sbjct 251 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCC 310 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||||| || || || | | ||| ||||| || | | |||| || ||| Sbjct 311 AACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGG 370 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | ||| | |||| | |||||||||| || || |||||| Sbjct 371 ATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTG 430 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || |||||||||||||||||||| ||| Sbjct 431 CCAGTTAGGGTCTTCACAAAGATTTGCATTTTG 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393306937482082