Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15565 131 2e-25 seq5311 123 2e-23 >seq15565 Length=372695 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| |||||||| ||||| |||||||| | || ||||||| ||| ||||| | Sbjct 366573 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366514 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || || ||||| || || || || |||||||| | Sbjct 366513 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 366454 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | ||||||||| | | || | ||||| | ||||| ||||| || | Sbjct 366453 CCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGG 366394 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 || ||||| | | || |||||| ||||||||||| || | || |||| Sbjct 366393 CCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 366344 >seq5311 Length=191600 Score = 123 bits (136), Expect = 2e-23 Identities = 212/304 (70%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 || || ||||| || | ||||||||||| ||||||| ||||| |||||||| | || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 14267 GGCATCAATCCTCGtttt-tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 ||||||| ||| |||||| || | ||| ||||||| | || | || | ||||| || Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAA-TCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 | || | ||| |||| || | || |||||||||| | || || | ||||| | | Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 ||||| | || | |||| || ||||| | | || |||| | ||||||||||| | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 14445 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14504 | | | | || ||||||| | | |||||| | ||||| || | || ||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 14505 CAGA 14508 |||| Sbjct 42368 CAGA 42371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480131380464560