Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15565 145 1e-29 seq896 111 2e-19 seq5156 107 2e-18 seq53448 89.7 6e-13 >seq15565 Length=372695 Score = 145 bits (160), Expect = 1e-29 Identities = 177/240 (74%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 33593 GCAGTGCAGAC---CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| | ||||| |||| ||||| ||||| | ||||| ||||| || || || ||||| Sbjct 366587 GCATTTCAGACTCACCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCAT 366528 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || || || || || ||||| ||||| || || || || || || |||||||| ||||| Sbjct 366527 CAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTC 366468 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTT 33766 || ||||||||||| | || | |||||||| || | |||| ||||| Sbjct 366467 CACAGCAGCAAAGGCCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCG 366408 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 | ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| Sbjct 366407 CAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366348 >seq896 Length=1900147 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | ||| | |||||||| || ||||||||||| || ||| Sbjct 651116 GTTACTTTCTATGATGTGTACCTGGTTCTGCAAGCTTTTATATTGACTACTGCGGTCTTT 651175 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | ||||||||| ||||||||||||||||| ||| ||| | |||| Sbjct 651176 CTTGGCTTGACTGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 651234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||| ||||||||||| | ||||| ||||| || |||||||||||| Sbjct 633790 TGCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCGGCCAGCGTGCAC 633849 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 633850 ATCCGCATGG 633859 >seq5156 Length=389234 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 236484 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 236543 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 236544 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 236603 Query 62508 CTATTTCTAAGACCGTA 62524 || || || | ||| || Sbjct 236604 CTGTTCCTTATACCATA 236620 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || || ||| ||| | || || || || ||||| | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCC---TTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCAC 62682 |||| || ||||| ||||| |||||| ||||| | ||| || || || || || | Sbjct 240726 CATACGTTTCATAGGGTCCACATTCCTTG---GCTAGGTCACAGCTGGCTTCCAAAGCTC 240782 Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 | |||||||| ||||||||||| | |||||| | || ||||| ||||| ||||| | Sbjct 240783 CATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGG 240842 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | || | | || || || || || |||| ||||| || ||||| || || || | || Sbjct 240843 GGTACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGAT 240902 Query 62803 GTCTCTTATTAGA 62815 | | ||||| || Sbjct 240903 GGCGTTTATTTGA 240915 >seq53448 Length=237101 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 207261 TCATCCCTGCTGATCAGTTCATTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 207202 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| || || | ||| || || || || ||||| | ||||| || ||||||||||| Sbjct 207201 AGCCAGAAGATAGCAGCAAAGGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 207142 Query 33726 ATAAGTCTCTCTCC 33739 | | |||||| || Sbjct 207141 ACCACTCTCTCCCC 207128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626926406561760