Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq53448 93.3 4e-14 seq174228 82.4 7e-11 >seq53448 Length=237101 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| || || || | ||||||||| | |||| || | Sbjct 207263 CTTCATCCCTGCTGATCAGTTCATTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 207204 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| || ||||||||||| || ||||| ||||| | || ||||| || ||||| | Sbjct 207203 TCAGCCAGAAGATAGCAGCAAAGGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 207144 Query 11772 CTACTACTCTTTCTCC 11787 | || ||||| || || Sbjct 207143 CCACCACTCTCTCCCC 207128 >seq174228 Length=3070 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/161 (71%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| ||||| |||||||| ||||| || || || || ||||||||||| | Sbjct 1926 CAGGCAAAGTCACAGTGTAAACCCAGATCTCTGCTAATAAGCTCGTTAGAAAATGTAAGG 1867 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 | ||||||| ||| |||| || | ||| |||| | ||||| || |||| |||| Sbjct 1866 TCAGGCATCAGTCCCGGTTTCTTGAGCCATTATATTGACGCAAAAGAGCCAG---AGAAG 1810 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 | | || |||| ||||| || || | || ||||||||| Sbjct 1809 GTCGCATCTGCAGCAGCAAAGGCCACAAATCATTCTCCATA 1769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466374025192480