Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15565 163 4e-35 seq896 156 6e-33 seq5311 145 1e-29 seq5156 113 6e-20 seq53448 93.3 6e-14 >seq15565 Length=372695 Score = 163 bits (180), Expect = 4e-35 Identities = 172/226 (76%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 366573 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366514 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||| ||||| || ||||| || || ||||||| Sbjct 366513 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 366454 Query 36300 CAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356 | | || | |||||||| || | |||| ||||| | ||||| |||| Sbjct 366453 CCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGG 366394 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 |||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 366393 CCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366348 >seq896 Length=1900147 Score = 156 bits (172), Expect = 6e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||||| || | | ||||| ||||||||||||||||| | || Sbjct 654647 TTACTTTTTATTAACTGCTTCCAGAAACCGCAACAGGTGCAAGAACAGATTGATAACGTC 654588 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| | |||| | ||||||||||| ||||| || || ||||| | || || || Sbjct 654587 CAAGTAGAGACTGATGGCAGCTAACACATACTCTTCGGGAGACAGCTTGTACATCAGCGA 654528 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| || |||||||| || ||||| ||||| | |||||| || | || || || ||| | Sbjct 654527 GTGTGTATCATAGATGATAAATCCACAGAAAAGAAGGGCGCCTAGAGAAGCCAAGACTAA 654468 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 ||||||| |||||| || | ||| Sbjct 654467 TTCCACTGATTCACTATGGAAAAA 654444 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 651234 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCAGTCAAGCCAAGA 651175 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || |||||||||| || |||||||||| ||| | | |||||||||||||||||| Sbjct 651174 AAGACCGCAGTAGTCAATATAAAAGCTTGCAGAACCAGGTACACATCATAGAAAGTAAC 651116 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||| ||||||||||| ||||||| Sbjct 633859 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 633800 Query 9907 TGGAGGAGCA 9916 |||||||||| Sbjct 633799 TGGAGGAGCA 633790 >seq5311 Length=191600 Score = 145 bits (160), Expect = 1e-29 Identities = 218/305 (71%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 ||||| || ||||||| |||||| ||||| ||||| || ||||||||||| || || || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 36221 GGCATTAGGCCACGCTTT-TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 36279 ||||| || || || ||| || ||||| ||||| ||| |||| | ||| | ||||| || Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 36280 TCCTTCTACTGCCGCAAA-GGCAATAAGTCTCTCTCCAT---AACCGGCACTGTCATGTA 36335 |||| | || |||| | || || || ||||||| || | | |||| | Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 |||| | | || | || ||||||||||| | |||||||||| |||| |||||||| | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 |||| || | || || |||||||| || | ||||| | ||||| ||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 36456 CCGAA 36460 | ||| Sbjct 42368 CAGAA 42372 >seq5156 Length=389234 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 236484 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 236543 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 236544 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 236603 Query 65301 CTATTTCTAAGACCGTA 65317 || || || | ||| || Sbjct 236604 CTGTTCCTTATACCATA 236620 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 255804 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 255863 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | |||||| | || || ||| | || || |||||||| |||| Sbjct 255864 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 255923 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || |||||| | || | |||||||| || ||||| Sbjct 255924 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCAT 255969 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || || ||| ||| | || || || || ||||| | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 >seq53448 Length=237101 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 207261 TCATCCCTGCTGATCAGTTCATTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 207202 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||| || || | ||||| || ||||| ||||||| ||||| || || |||||||| Sbjct 207201 AGCCAGAAGATAGCAGCAAAGGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 207142 Query 36302 ATAAGTCTCTCTCC 36315 | | |||||| || Sbjct 207141 ACCACTCTCTCCCC 207128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655151441307280