Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq15565 87.8 1e-12 seq5311 84.2 2e-11 >seq15565 Length=372695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| || | || ||||| || ||||| | |||||||||| Sbjct 366451 TGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGC 366510 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||||||| | |||||| | || | Sbjct 366511 TCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATG 366570 Query 22868 A 22868 | Sbjct 366571 A 366571 >seq5311 Length=191600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||| |||| |||| |||| || | || | ||| | |||| | | |||||||||| Sbjct 42211 TGGCATTTGATGCTGCGGAAGCGATCTTCTTCTTTGGTCCTTTTGTGTCAATATTCTGGC 42152 Query 22808 TGAAGAAA-CGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 | |||||| || || ||||| || | | |||||||||||||| |||||| | || Sbjct 42151 TCAAGAAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGTTTATTAGCAGAGAT 42092 Query 22867 GAAGGTCTACACTGTGACTTTGC 22889 || ||| ||||||||||||| || Sbjct 42091 GAGGGTTTACACTGTGACTTCGC 42069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354639183234526