Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15565 168 1e-36 seq5311 127 3e-24 seq5156 104 3e-17 seq53448 102 1e-16 seq3151 93.3 6e-14 >seq15565 Length=372695 Score = 168 bits (186), Expect = 1e-36 Identities = 182/240 (76%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 49971 GCAGTGCAGAC---CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 ||| | ||||| |||| ||||| ||||| || ||||||||||| || || || ||||| Sbjct 366587 GCATTTCAGACTCACCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCAT 366528 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 || || || || || ||||| ||||| || ||||| || ||||| |||||||| ||||| Sbjct 366527 CAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTC 366468 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTT 50144 || || |||||||| |||| | |||||||| ||| | |||| ||||| Sbjct 366467 CACAGCAGCAAAGGCCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCG 366408 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| Sbjct 366407 CAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366348 >seq5311 Length=191600 Score = 127 bits (140), Expect = 3e-24 Identities = 214/305 (70%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 ||||| || ||||| | |||||| ||||| ||||| | ||||||||||| || || || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 50023 GGCATTAGGCCACGCTTT-TTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGAT 50081 ||||| || || || ||| || ||||| ||||| ||| |||| | ||| | |||||||| Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 50082 TCCTTCTACTGCGGCAAAGGCAAC-AAGTCTCTCTCCAT---AACTGGCGCTGTCATGTA 50137 |||| | || |||| || || || || ||||||| || | |||| | Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| | | || | || ||||||||||| | ||||||||| | || || ||||| | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 |||| || | || || |||||||| ||| | || || | ||||| ||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 50258 CCGAA 50262 | ||| Sbjct 42368 CAGAA 42372 >seq5156 Length=389234 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 236484 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 236543 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 236544 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 236603 Query 79180 CTATTTCTAAGACCGTA 79196 || || || | ||| || Sbjct 236604 CTGTTCCTTATACCATA 236620 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || || ||| ||| | || || || || ||||| | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||||||||| || ||||||||||| || | || ||||| | || || ||| Sbjct 243596 ACTCGCTTCATAAAGAGGTCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGCTGC 243655 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 243656 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 243715 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 243716 TCCAGGTAAATAGC 243729 >seq53448 Length=237101 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || || || || || ||||| || || || |||||||||||||| ||||| | ||| || Sbjct 207261 TCATCCCTGCTGATCAGTTCATTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 207202 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| || || | ||||| |||||||| ||||| | ||||| || || |||||||| Sbjct 207201 AGCCAGAAGATAGCAGCAAAGGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 207142 Query 50104 ACAAGTCTCTCTCC 50117 || | |||||| || Sbjct 207141 ACCACTCTCTCCCC 207128 >seq3151 Length=615569 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAA-TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 50003 ||||| |||||| || || ||| || |||||| ||| | |||||| ||||| || || Sbjct 124603 TGTTTGGACATCAGGCA-GCTAAAGTCACAGTGCGAACCGTAGTCTCTGCTAATAAGCTC 124545 Query 50004 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 50063 |||||||| || | | |||||| || || | || || ||||| || | || | | Sbjct 124544 TTTGGAAAATCTGTGACTGGGCATCAGTCCTTGTTTCTTGAGCCAGAACACTGATTGATA 124485 Query 50064 TGAC----CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAA 50107 ||| |||||||||||||||||||| || ||||||| ||| |||| Sbjct 124484 TGAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAGGGCTACAA 124437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714971569116880