Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15565 140 3e-28 seq5311 132 5e-26 >seq15565 Length=372695 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| |||||||| ||||| |||||||| | || ||||||| ||| ||||| | Sbjct 366573 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366514 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || || ||||| || || || || |||||||| | Sbjct 366513 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 366454 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | | ||||||||| | | || | ||||| | ||||| ||||| || | Sbjct 366453 CCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGG 366394 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 || ||||| | | || |||||| ||||||||||| || | ||||||| Sbjct 366393 CCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 366344 >seq5311 Length=191600 Score = 132 bits (146), Expect = 5e-26 Identities = 214/304 (70%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 || || ||||| || | ||||||||||| ||||||| ||||| |||||||| | || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 13935 GGCATCAATCCTCGtttt-tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||||| ||| |||||| || | ||| ||||||| |||| | || | ||||| || Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAA-TCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052 | || | ||| |||| || | || |||||||||| | || || | ||||| | | Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||| | || | |||| || ||||| | | || |||| | ||||||||||| | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 14113 ATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 | | ||| || ||||||| | | |||||| | ||||| || | || ||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 14173 CAGA 14176 |||| Sbjct 42368 CAGA 42371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477525796622800