Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5311 109 5e-19 >seq5311 Length=191600 Score = 109 bits (120), Expect = 5e-19 Identities = 209/304 (69%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 || || ||||| || | ||||||||||| ||||||| ||||| |||||||| | || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 13723 GGCATCAATCCTCGtttt-tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 13781 ||||||| ||| |||||| || | ||| ||||||| | || | || | ||||| || Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 13782 TCCCTCAACTGCAGCAAACGCTA-TTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840 | || | ||| |||| || | | |||||||||| | || || | ||||| | Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 ||||| | || | |||| || ||||| | | || |||| | || || ||||||| Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 13901 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 | | | | || ||||||| | | |||||| | ||||| || | || ||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 13961 CAGA 13964 |||| Sbjct 42368 CAGA 42371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476391826148880