Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15565 159 5e-34 seq5311 132 6e-26 seq5156 111 2e-19 seq53448 98.7 1e-15 >seq15565 Length=372695 Score = 159 bits (176), Expect = 5e-34 Identities = 180/240 (75%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 42076 GCAGTGCAGAC---CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 ||| | ||||| |||||||||| ||||| | ||||||||||| || || || ||||| Sbjct 366587 GCATTTCAGACTCACCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCAT 366528 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 || || || || || ||||| ||||| || ||||| || ||||| |||||||| ||||| Sbjct 366527 CAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTC 366468 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTT 42249 || || |||||||| | || | |||||||| || | |||| ||||| Sbjct 366467 CACAGCAGCAAAGGCCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCG 366408 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 | ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| Sbjct 366407 CAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366348 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511 ||||| || ||||| || ||||| || ||||| || |||| || || |||||||| | Sbjct 363903 TTTTCATTAACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATAAAATGT 363844 Query 42512 TTTTCGTCCGGTGTTAATTTATTCCAATCATTGA-TATCTTTAGATATATCTACTTCTTC 42570 | ||||| ||| || | |||| | |||| | || || || | || || || || Sbjct 363843 CTCTCGTCGGGT-TTCAGCGCTTCCCAGTGTTGAATGTCCTTGGAAAGGTCCACCTCCTC 363785 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 ||||||| || || || || | || || ||||| | |||||||||||| |||| || Sbjct 363784 AGCCGTCCAGAAGGAGGCCTCGGTTTTCTTGTACATCTGCCAGATATCATGGTATTCGAT 363725 Query 42631 TGGGAAAATAACAAA 42645 || || ||||| || Sbjct 363724 GGGAAAGATAACGAA 363710 >seq5311 Length=191600 Score = 132 bits (146), Expect = 6e-26 Identities = 215/305 (70%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 ||||| || ||||| | |||||||||||| ||||| || ||||||||||| || || || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 42128 GGCATTAGGCCACGCTTT-TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||| || || || ||| || ||||| ||||| ||| |||| | ||| | |||||||| Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 42187 TCCTTCTACTGCCGCAAA-GGCAATAAGTCTCTCTCCAT---AACCGGCACTGTCATGTA 42242 |||| | || |||| | || || || ||||||| || | | |||| | Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 |||| | | || | || ||||||||||| | ||||||||| | || || ||||| | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 |||| || | || || |||||||| || | || || | ||||| ||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 42363 CTGAA 42367 | ||| Sbjct 42368 CAGAA 42372 >seq5156 Length=389234 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 236484 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 236543 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 236544 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 236603 Query 71263 CTATTTCTAAGACCAT 71278 || || || | ||||| Sbjct 236604 CTGTTCCTTATACCAT 236619 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || || ||| |||| | || || || ||||| || | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| |||||||||||||| || || || || || ||||| || | | |||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || || ||||| || | |||||| ||||| || || || || ||||||| Sbjct 240726 CATACGTTTCATAGGGTCCACATTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 240785 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || || | |||||| | || ||||| ||||| ||||| || | Sbjct 240786 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGGGGT 240845 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || || || || ||||||| ||||| || ||||| || || || | || | Sbjct 240846 ACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 240905 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 240906 GTTTATTTGA 240915 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || |||| || |||| | || || ||||| || | |||||||| ||||| |||||| Sbjct 250521 CTGGACAGCTGTGGACGGTTGGTCCCAGCATTGAACAGAGTAGGAGAGGCGTGAGTAAAC 250580 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| || || ||||| || ||||| || | || ||||| || || || Sbjct 250581 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATTGCAGCGTCGATATCGTCTTTGTGAATC 250640 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 250641 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 250679 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||||||||| || ||||||||||| || | || ||||| | || || ||| Sbjct 243596 ACTCGCTTCATAAAGAGGTCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGCTGC 243655 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 243656 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 243715 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 243716 TCCAGGTAAATAGC 243729 >seq53448 Length=237101 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 207261 TCATCCCTGCTGATCAGTTCATTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 207202 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| || |||| ||||| || ||||| ||||| | ||||| || || |||||||| Sbjct 207201 AGCCAGAAGATAGCAGCAAAGGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 207142 Query 42209 ATAAGTCTCTCTCC 42222 | | |||||| || Sbjct 207141 ACCACTCTCTCCCC 207128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668058318723920