Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5156 100 4e-16 >seq5156 Length=389234 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| |||||| || || |||||||| |||||||| Sbjct 241957 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACCCCGTACATGCTCTACAAA 241898 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || ||||| || |||||||| | || ||||||||||||| || ||| ||| Sbjct 241897 GATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAACCTG 241838 Query 97299 TGCACGGAAATTGTAGAGTA 97318 || || ||||| |||||||| Sbjct 241837 TGTACAGAAATAGTAGAGTA 241818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737657349215920