Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq53448 84.2 2e-11 seq15565 84.2 2e-11 >seq53448 Length=237101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| | | ||||||||||||| || | Sbjct 215981 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAGAACACAGTTCATTCCAATAAGG 215922 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||| ||||| Sbjct 215921 CCAACAGGCAAGGCTTCTGTCAAAAA 215896 >seq15565 Length=372695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | | || |||||||| ||||| || |||||||| || ||||| Sbjct 365191 AATGTAAGTGTCAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTG 365132 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||||||| ||||||||||| Sbjct 365131 GAAGCCATAGAAACAGCGGGCCTCTGTGACCTGAACTTC 365093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429053425405284