Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq77463 141 2e-28 seq850 113 1e-19 seq111151 109 1e-18 seq3188 102 2e-16 seq10009 96.9 8e-15 seq5311 86.0 1e-11 >seq77463 Length=3863 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||| || ||||| ||||| || ||||| | |||||||| Sbjct 263 GTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCCAACTGTTTTCCT 322 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| | || | ||||||||||| ||||| || || Sbjct 323 GCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGGATCTTGGCCTTG 382 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| ||||| || ||||| ||||| || || Sbjct 383 ACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTGCCAGTTAGGGTC 442 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| || ||||||||| Sbjct 443 TTCACAAAGATTTGCATTTTG 463 >seq850 Length=2098092 Score = 113 bits (124), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| ||||| || | || |||||||||||||| || | ||||| ||||| || | Sbjct 356303 AAGGACTAGGTGCAGGGTGGATTCTTTCTGAATGTTGTGATCAGAAAGAGTGTAGCCACC 356362 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || ||||| ||| || ||||||| || || ||||| || |||||||| Sbjct 356363 TTCCGACTCCTTGCCTGCAAAGATTTGCTTCTGTTGGTCGGG-GGTATGCCCTCTTTATC 356421 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| | || ||||| || | || || || || || |||||||| ||||| || Sbjct 356422 CTGGATCTTGACCTTCACATTCTCAATGGCATTACTGGGCTCCACCTCTAGGGTAATGGT 356481 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| || | | || ||||| || ||||||||| Sbjct 356482 CTTGTGGGTCTGGCTCTTCACAAAGATTTGCATTTTG 356518 >seq111151 Length=252830 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| ||||| || |||||||| | ||| | ||||| | ||| || |||| || Sbjct 126118 TCTTT-TGAATGTTGTAGTCAGAGAAAGTAAGGCTATCTTCCACTTGCTTACCAGGGAAG 126060 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||||||| ||||||| ||| |||||| |||| ||||||||||| | |||| |||| Sbjct 126059 ATCAGCCTCTGCTGATCAGTAGGAATTCCTCCTTTGTCCTGAATCTTGACCTTTATATTT 126000 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 |||| | || |||| || || || | ||||| || || |||| || || ||| Sbjct 125999 TCTATAGAGTCTGAGGGTTTAACTTCAAGCATGATAGTTTTCCCCCTAAGAGTCTTCACA 125940 Query 104549 AATATCTGCATTTTG 104563 || ||||| || ||| Sbjct 125939 AAAATCTGAATCTTG 125925 >seq3188 Length=540008 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 104355 GATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTT 104414 |||| | ||||| || || ||||| || |||||| | | | | ||||| | | Sbjct 280759 GATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAAAG-----TATGGCTTCTTCCTGCT 280813 Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474 | || ||||||| || ||||| | ||||||||| ||||| || | | |||| |||| Sbjct 280814 GCTTACCAGCAAGAAGCAGCCTTAGCCAATCAGGAGGAATTCCCTCCTAAACCTGGATCT 280873 Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 | | || ||||||||||| | ||| ||||| ||||| || || |||||||| || Sbjct 280874 TGGTTTCTACATTTTCTATAGCATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCCA 280933 Query 104535 TAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| || |||| || |||||||| ||| Sbjct 280934 TAAGGGTCTTTATGAAAATCTGCATGTTG 280962 >seq10009 Length=301806 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || |||||||| | || | | ||||| || || || || | ||| | Sbjct 118452 CTTTCTGGATCTTTTAGTCAGACATGGTGCAGACATCTTCCAGCTGCTTGCCTGAAAAGA 118393 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 || ||| || || |||| ||| | || | ||| |||||||||||||| || || || | Sbjct 118392 TTGACCTGTGCTGGTCAGAGGGTGTGCCGT-TTTGTCCTGAATCTTTGCCTTGACGTTCT 118334 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || || ||||| ||||| || || || ||||| | || || || | || || Sbjct 118333 CAATAGTGTCTCTGGGTTCAACCTCCAGAGTGATGGTCTTGCTTGTCAGGGTCTGTATAA 118274 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 118273 AGATCTGCAT 118264 >seq5311 Length=191600 Score = 86.0 bits (94), Expect = 1e-11 Identities = 207/306 (68%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 268981 TTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG 269040 ||| || ||||||||||| | || || | ||| || | ||| ||| || | | | Sbjct 42372 TTCTGAAATGTACAGTCTCCTCATTGACAGTTACATTAAAGATTTCAAAGAGAGGGTATA 42313 Query 269041 ACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGA 269099 ||| || | |||| |||| ||| ||| ||| ||| || |||| | || |||| Sbjct 42312 ACTCTTCAATGCTATTGAGATA-ATGCCTTGT-TGAAAAAGAAGGCTGACTAGGTCCTGA 42255 Query 269100 AATGGATAAACGATAGCGCGCCTTAC---GGAGAAAG-GTTAGTTGCTTTTGCCGCTGTA 269155 |||||| || | | | ||| | |||||| | ||| || || |||| |||| Sbjct 42254 GATGGATTGGGGACAAAGAGGCTTCCTATGGAGAACGAGTTTGTGGCATTTGATGCTGCG 42195 Query 269156 GAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAA-GAGGCCT 269214 |||| || ||||| | || |||||| | || || ||| | ||||||| | || || Sbjct 42194 GAAGCGATCTTCTTCTTTGGTCCTTTTGTGTCAATATTCTGGCTCAAGAAAACGGGGACT 42135 Query 269215 TATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGA 269274 ||||| || | || || || ||||| || || ||||| || || ||||||||||| || Sbjct 42134 GATGCCTGGCCTTACATTTTCCAACGAGTTTATTAGCAGAGATGAGGGTTTACACTGTGA 42075 Query 269275 CTTCGC 269280 |||||| Sbjct 42074 CTTCGC 42069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145980738781336