Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8072 84.2 2e-11 >seq8072 Length=1211495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | || ||||| | |||||| ||| ||||||| | |||||||| |||| Sbjct 11720 ACCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGA 11661 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA-ATTAAACGCTGCTGATCCACCG 48617 ||| || | || ||||||||||| || || || || | | |||||| || | Sbjct 11660 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAG 11601 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| || || ||||| | |||| || || | || Sbjct 11600 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAA 11541 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || |||||||| || || || || ||||| |||||||||||| || Sbjct 11540 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCCTG 11488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419365779939242