Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq7033 109 6e-19 >seq7033 Length=464768 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || || |||| |||||||||||||||||||||| || | Sbjct 230454 TCTAGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGG 230513 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 | ||||| ||||| || || || | ||| | ||| ||||| ||||||| ||||| | Sbjct 230514 TGATGCCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAG 230573 Query 10257 AGAATCTAAAGACCCTAAGG 10276 |||| || |||||||| ||| Sbjct 230574 AGAAGCTGAAGACCCTCAGG 230593 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| ||||| || ||||||| ||| |||||||| || || |||| | Sbjct 232864 AGCTCCAAGAGAAAGGTGTCTATAAGGCCATGAATGAGTTTGACATCTTCATCAACTGCA 232923 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 |||||| |||||||||||| || || Sbjct 232924 TAGAAGAATACATGACCATCAAGAT 232948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544866442097920