Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq116 141 1e-28 seq3418 127 3e-24 >seq116 Length=588768 Score = 141 bits (156), Expect = 1e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || ||||| || || |||| || ||| || ||||| || ||||| ||| Sbjct 399703 ATGAGCCTGGTCGTCTGGAAGAGCCGTTCATCGTCCCACTCAGGATGCTCCCGTTTAAGA 399644 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| |||||||||||||| |||| |||||||| ||||| |||||||| ||||||||| Sbjct 399643 ACATCACACACTCTGTTGTGCTCCCGCAGCCAGATGGTAGCATACATCATCAGACCAGGC 399584 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| |||| || || || || | || | || || || | || || Sbjct 399583 ACCAGACCAAAGACCTCCTGCCCCACTGCAAACCGAAGATGCTCAGGGGTGTGAGGTGGG 399524 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||||| | ||||| ||||| || | ||| || ||||| || || |||| Sbjct 399523 TAGATCATCTCTACCTGAGTGTCTTTAACTGTGGGAGGGTACATCTCTCCACCAAT 399468 Score = 138 bits (152), Expect = 2e-27 Identities = 202/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || ||| |||||| |||||||| || | || | |||| ||| Sbjct 401228 AAGGGACAGCCCTTCACATTGTTACAGATGAGAGACTGAATGGAGGCGGTGTTGATAATC 401169 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| || || ||||| || |||||||| || || || ||| Sbjct 401168 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAAATGGGA 401109 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 401108 TTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCCCCAAAG 401049 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||||||||||||||||| | | | || | ||||| || |||||| Sbjct 401048 ATAGCATCTGGACGGGGCTTTTCCACCAGCAGGGCAGGATAGAGCTCCATGGCATCGATG 400989 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || || || |||||||| ||||||| Sbjct 400988 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 400943 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 10288 CACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 10347 ||||||| || || | ||||| || || |||| || ||| || || || || | || Sbjct 397297 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCAGCAACAGGCGGAAGTGCTCTGGTGT 397238 Query 10348 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGG 10407 | |||||||| |||||||| ||||||||| || ||| | |||| | ||||||| | | Sbjct 397237 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 397178 Query 10408 GAGGGCTGTCAATCAAATCGGATCT 10432 | || ||||||||||||| ||||| Sbjct 397177 GCGGACTGTCAATCAAATGTGATCT 397153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 200/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| |||||||| || ||| | || || || || || | ||||| | ||||| Sbjct 400181 CTTACCCGGCCAGCGATCTGTCTGGTAAATGACTCAACAAAGTGGGTGAGTCCGTGCTCG 400122 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTT-TGTTTTATCAATCTC 9440 ||||| ||||| |||||||| | ||| | |||||| |||| || | | || |||| Sbjct 400121 ATGAGGATGGAGTTGTTGTAGAGGAACTGCTTGTAGTTGTACTCCTGGTCT-TCGATCTG 400063 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 || || |||| || | ||||||||||| | |||| || |||| || || Sbjct 400062 GAAGCTGTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCGGCTGCGATGCG 400003 Query 9501 ATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || |||||||||||| | || ||||| || || | ||| | | ||||| Sbjct 400002 GTTCTGGTACTGGAACTGCTGATTGAAAAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTG 399943 Query 9561 GTAGCCGCTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCC 9614 |||||| || || ||||| || || || || |||| ||| ||||| || ||||| Sbjct 399942 GTAGCCACTTAGGTGCTGCACGTAGTCTTCGATCAC---AATCTTGATCGTCTCCCC 399889 >seq3418 Length=466320 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | || || || ||| ||| Sbjct 38321 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTC 38380 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | |||||||| || |||||| Sbjct 38381 CCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGATG 38440 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || |||||||| | || || | ||| ||||| | || |||||||| Sbjct 38441 GAGTTAGGCTGGCACTTTTCCAGAATCAACCCTGGGTAGAACTCTAAGGCATCGATGTCA 38500 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| || || | || || || || ||||| ||||||| Sbjct 38501 CCGTACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTG 38543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705272299192480