Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9155 109 5e-19 seq8072 96.9 3e-15 seq77463 89.7 5e-13 seq1650 86.0 6e-12 >seq9155 Length=358325 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||||||| | || || || | ||| | || || || | | |||||| Sbjct 307796 CACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCCTC 307737 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| |||| || | ||||||||| || || || || ||||| ||||| | Sbjct 307736 CAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 307677 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| | | |||||| | | | ||| |||| || ||||| || Sbjct 307676 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGTCTT 307617 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || || || ||||||||||| |||||||| Sbjct 307616 GCCCGTCAGGGTCTTCACAAAGATATGCATGCT 307584 >seq8072 Length=1211495 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | || || |||||| | | ||| || || || ||| | Sbjct 11708 TCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTACGGCC 11649 Query 94852 ATCCTCCAGCTGTTTTCC-GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || || ||||| | || ||||| || |||||||| ||||| | Sbjct 11648 ATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTTCCT 11589 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || |||||||| | | |||||| | | || || || | |||| Sbjct 11588 TATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGGTGA 11529 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||||| || ||||| || ||||| || |||||||| || Sbjct 11528 TGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCCT 11489 >seq77463 Length=3863 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || || || || | || ||||| | ||||| | ||| ||| Sbjct 251 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCC 310 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||||||| ||||||| | || ||||| || || | || | ||||| || | Sbjct 311 AACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGG 370 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| | | |||||| | | || || || | |||||||| || Sbjct 371 ATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTG 430 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||| ||||| Sbjct 431 CCAGTTAGGGTCTTCACAAAGATTTGCAT 459 >seq1650 Length=1266344 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || | || || || | || ||||| || || || | |||| || Sbjct 465857 ATCCTCCAGCTGCTTGCAGCAAATAATCAGCCTCTGCTGGTCAGGTGGGTTGCCTTTCTT 465916 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| ||| |||||| | | || || |||| ||||| Sbjct 465917 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGAT 465976 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || || || |||||||||||||||||| Sbjct 465977 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 466013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446233308039120