Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq971 91.5 2e-14 seq23396 82.4 1e-11 >seq971 Length=1330668 Score = 91.5 bits (100), Expect = 2e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || |||||||||||||| || || |||||||| || || Sbjct 803685 GCCAAGCGACACCGCAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCCAT 803627 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 803626 CCGGCGCTTGGCTCGGCGCGGCGGAGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 803567 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 803566 TCGCGGTGT 803558 >seq23396 Length=508020 Score = 82.4 bits (90), Expect = 1e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||| || | |||||||| || ||||||||||| || ||| Sbjct 370623 GCCAAGCGCCATCGCAAGGTTCTGCGCGGCAACATCCAGGGCATCACCAAGCCTGCCATC 370682 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || || ||||| || || ||||| |||||| | ||||||| | |||| || |||| Sbjct 370683 CGCCGCCTGGCCCGACGCGGTGGTGTCAAGAGCATCTCTGGCCTCATCTACGAGGAGA 370740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78739428068706