Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15565 159 4e-34 seq5311 123 3e-23 seq5156 113 6e-20 seq53448 98.7 1e-15 seq3151 87.8 2e-12 seq174228 82.4 9e-11 >seq15565 Length=372695 Score = 159 bits (176), Expect = 4e-34 Identities = 180/240 (75%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 33315 GCAGTGCAGAC---CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 ||| | ||||| |||| ||||| ||||| || ||||||||||| || || || ||||| Sbjct 366587 GCATTTCAGACTCACCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCAT 366528 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || || || || || ||||| ||||| || || || || ||||| |||||||| ||||| Sbjct 366527 CAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTC 366468 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTT 33488 || ||||||||||| | || | |||||||| || | |||| ||||| Sbjct 366467 CACAGCAGCAAAGGCCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCG 366408 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 | ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| Sbjct 366407 CAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366348 >seq5311 Length=191600 Score = 123 bits (136), Expect = 3e-23 Identities = 213/305 (70%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 ||||| || ||||| | |||||| ||||| ||||| | ||||||||||| || || || Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 33367 GGCATTAGGCCACGCTTT-TTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGAT 33425 ||||| || || || ||| || ||||| ||||| || | || | ||| | |||||||| Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 33426 TCCTTCTACTGCAGCAAA-GGCAATAAGTCTCTCTCCAT---AACCGGCGCTGTCATGTA 33481 |||| | ||| |||| | || || || ||||||| || | | |||| | Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 |||| | | || | || ||||||||||| | ||||||||| | || || ||||| | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 |||| || | || || |||||||| ||| | || || | ||||| ||||||| Sbjct 42308 AGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATTT 42367 Query 33602 CCGAA 33606 | ||| Sbjct 42368 CAGAA 42372 >seq5156 Length=389234 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 236484 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 236543 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 236544 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 236603 Query 62457 CTATTTCTAAGACCGTA 62473 || || || | ||| || Sbjct 236604 CTGTTCCTTATACCATA 236620 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || || ||| ||| | || || || || ||||| | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||||||||| || ||||||||||| || | || ||||| | || || Sbjct 243592 CTCCACTCGCTTCATAAAGAGGTCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCG 243651 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 243652 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 243711 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 243712 AGGCTCCAGGTAAATAGC 243729 >seq53448 Length=237101 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || ||||| || || || |||||||||||||| ||||| | ||| || Sbjct 207261 TCATCCCTGCTGATCAGTTCATTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 207202 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||| || || | ||| || || ||||| ||||| | ||||| || ||||||||||| Sbjct 207201 AGCCAGAAGATAGCAGCAAAGGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 207142 Query 33448 ATAAGTCTCTCTCC 33461 | | |||||| || Sbjct 207141 ACCACTCTCTCCCC 207128 >seq3151 Length=615569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAA-TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 33347 ||||| |||||| || || ||| || |||||| ||| | |||||| ||||| || || Sbjct 124603 TGTTTGGACATCAGGCA-GCTAAAGTCACAGTGCGAACCGTAGTCTCTGCTAATAAGCTC 124545 Query 33348 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA----TGGAAG 33403 |||||||| || | | |||||| || || | || || ||||| || | | || Sbjct 124544 TTTGGAAAATCTGTGACTGGGCATCAGTCCTTGTTTCTTGAGCCAGAACACTGATTGATA 124485 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||| || |||||||||||||||||||| || || |||| ||| Sbjct 124484 TGAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAGGGC 124442 >seq174228 Length=3070 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/161 (71%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || || ||||| | |||| ||||| ||||| || ||||| ||||| || || Sbjct 1926 CAGGCAAAGTCACAGTGTAAACCCAGATCTCTGCTAATAAGCTCGTTAGAAAATGTAAGG 1867 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 | ||||| || || | || || ||||| |||| || || || || ||||| |||| Sbjct 1866 TCAGGCATCAGTCCCGGTTTCTTGAGCCATTATATTGACGCAAAAGAGCCAGA---GAAG 1810 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA 33464 | | ||| | ||||||||||| | || || |||||||| Sbjct 1809 GTCGCATCTGCAGCAGCAAAGGCCACAAATCATTCTCCATA 1769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620087545304720