Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5156 100 7e-16 seq5311 84.2 6e-11 >seq5156 Length=389234 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 241966 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACCCCGTACATG 241907 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 241906 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGC 241847 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || || ||| Sbjct 241846 AGCAACCTGTGTACAGAAATAGTAGAGTATACC 241814 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| || || || |||||||| ||||| | Sbjct 243738 GGGGCATTTGCTATTTACCTGGAGCCTTGGCACTTAGACATCTTTGAGTTCCTTGACTTG 243679 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| || || || || ||| || || ||||| |||| ||| |||||| || Sbjct 243678 AAGAAGAACACAGGGAAGGAAGAGCAGCGAGCCCGGGATCTCTTCTTTGCCCTTTGGATT 243619 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | |||| ||||||||||| |||||| Sbjct 243618 CCGGACCTCTTTATGAAGCGAGTGGAG 243592 >seq5311 Length=191600 Score = 84.2 bits (92), Expect = 6e-11 Identities = 139/195 (71%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 || || ||||| || | || |||| |||||| | |||| || ||| | | ||| Sbjct 42279 AAAAAGAAGGCTGACTAGGTCCTGAGATGGATTGGGGACAAAGAGGCTTCCTATGGAGAA 42220 Query 22492 CGTCTTATTG-CATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAA 22549 || || || |||||| || | |||| || ||||| | ||| | ||||||| ||| Sbjct 42219 CGAGTTTGTGGCATTTGATGCTGCGGAAGCGATCTTCTTCTTTGGTCC-TTTTGTGTCAA 42161 Query 22550 TCTTTTGGCTaaa-aaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 | || ||||| || |||||| | | | ||||| || || || ||||| || ||||| ||| Sbjct 42160 TATTCTGGCTCAAGAAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGTTTATT 42101 Query 22609 AGCCGAGATGAGGGT 22623 ||| ||||||||||| Sbjct 42100 AGCAGAGATGAGGGT 42086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1297220945783244