Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq77463 93.3 4e-14 >seq77463 Length=3863 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || || |||||||| | || ||||| | Sbjct 460 AATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACACTGGAGGTGGATCCCAG 401 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| || ||| || ||||| | || | |||||||| Sbjct 400 TGACACCATGGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCGCCCCTGACCA 341 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| || ||||| || ||||||| | |||| | |||||||| Sbjct 340 GCAGTGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGCCACACTCTCTCTGATTACAA 281 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || ||||| ||||| || || Sbjct 280 TATCCAGAAAGAGTCCACCCTGCA 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431388527058230