Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq15565 104 3e-17 seq5311 84.2 2e-11 >seq15565 Length=372695 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | |||||| |||||||||||||| |||||||| |||||| ||| Sbjct 366544 AATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCA 366485 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 || || || || |||||||| || ||||| ||||||| ||||| || | | || Sbjct 366484 GAGAAGAAGATCCCTTCCACAGCAGCAAAGGCCACAACCCGTTCTCCATAGGTGGCCTCT 366425 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 || | |||||| | ||||| ||||| || || || | |||||| | ||| || Sbjct 366424 TTGTCCCCGATCCAGCGCAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCA 366365 Query 93323 ATAGCGTTAAATAGGTAATC 93342 ||||| || || || || || Sbjct 366364 ATAGCATTGAAGAGATATTC 366345 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| |||||||||||||| | || ||||| Sbjct 365199 GAATCTTTAATGTAAGTGTCAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATG 365140 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | || || |||| ||| |||||||| Sbjct 365139 GCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACCTGAACTTCTTG 365090 >seq5311 Length=191600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 93107 TGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 |||||||| || |||| || || | ||||| ||| ||||| | || || | |||||| Sbjct 42081 TGTAAACCCTCATCTC-TGCTAATAAACTCGTTGGAAAATGTAAGGCCAGGCATCAGTCC 42139 Query 93166 TCGTTT-CTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 ||||| ||||||||| |||||||| ||||| |||| | || || || ||||| | | Sbjct 42140 CCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGATCGCTTCCGCAG 42199 Query 93225 CTGCAAATGCCACAA 93239 | |||||||||||| Sbjct 42200 CATCAAATGCCACAA 42214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554304516576080