Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9155 98.7 8e-16 >seq9155 Length=358325 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | |||||||| || | ||| Sbjct 307587 ATGCATATCTTTGTGAAGACCCTGACGGGCAAGACCATTACTCTTGAGGTCAAGCCCAGT 307646 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||||||||| || || ||||| || || Sbjct 307647 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 307706 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || |||||||||||||| ||| | |||||| || ||| | || || ||||| Sbjct 307707 CAAAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCAGACCCTGTCTGACCACAAC 307766 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| |||| Sbjct 307767 ATCCAGAAAGAGCCCAC 307783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417849397419730