Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8072 156 8e-33 seq9155 152 9e-32 seq77463 136 7e-27 seq6003 118 2e-21 seq1650 118 2e-21 seq16375 91.5 3e-13 seq10009 91.5 3e-13 >seq8072 Length=1211495 Score = 156 bits (172), Expect = 8e-33 Identities = 172/228 (75%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| | ||| |||| || || |||||||| ||| ||||||| || || || Sbjct 11719 CCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGAC 11660 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG-AATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| | |||||| || ||| || || || || || || || || || Sbjct 11659 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGG 11600 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||| || || ||||| |||||||| || || ||||| | ||| || Sbjct 11599 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAAC 11540 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 11539 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq9155 Length=358325 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | |||| |||||| |||||||| | || || || ||| ||||| || Sbjct 307795 ACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCCTCC 307736 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| Sbjct 307735 AGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 307676 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| ||| |||||||| | | || || | || ||||| || Sbjct 307675 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGTCTTG 307616 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || ||||| Sbjct 307615 CCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq77463 Length=3863 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| ||||| || ||||| ||||| || |||||||| Sbjct 251 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCC 310 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||||| || || || || ||||||| || ||||| || | ||| | || || || || Sbjct 311 AACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGG 370 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| ||| |||||||| | || || |||| |||||||| || Sbjct 371 ATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTG 430 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| || || || |||||| || Sbjct 431 CCAGTTAGGGTCTTCACAAAGATTTGCATTTTG 463 >seq6003 Length=190268 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| |||| |||||| || | |||||||| Sbjct 5755 ACCACGTGCAGGGTAGACTCTTTCTGGATGTTGTAATTGGAGAGAGTGCGGCCATCTTCC 5696 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||| | || || || ||| |||| || || || || Sbjct 5695 AGCTGCTTGCCAGCAAACATGC----TGGTCGGGGGGTGGGAGTGCCCTCTTTATCCTGG 5640 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| |||||||||||| | || || || ||||||||| || Sbjct 5639 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCATCAGGGTGATGGTCTTG 5580 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || |||| ||| ||||| || |||||| || Sbjct 5579 CTGGTCAGGGACTTCACGAAGATTTGCATTTTG 5547 >seq1650 Length=1266344 Score = 118 bits (130), Expect = 2e-21 Identities = 139/184 (76%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 68279 GATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA-TGAGTC 68337 |||||| || | ||| || |||| | ||| || | |||||| | | | |||| | || | Sbjct 465831 GATGTTGTAGTTGGACAGGGTCCAGC-ATCCTCCAGCTGCTTGCAG-CAAATAATCAGCC 465888 Query 68338 TTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGG 68397 | || ||||| ||||| |||||| ||||||||| ||||| |||||||| |||||||| Sbjct 465889 TCTGCTGGTCAGGTGGGTTGCCTTTCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGG 465948 Query 68398 TGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 |||| | ||||| || | |||||||| || ||||| |||||||| || || |||| Sbjct 465949 TGTCACTGGGCTCTACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCT 466008 Query 68458 GCAT 68461 |||| Sbjct 466009 GCAT 466012 >seq16375 Length=211985 Score = 91.5 bits (100), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 9/141 (6%) Strand=Plus/Minus Query 68267 GGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGC 68326 ||||||||| |||||||| ||||| || || || | ||||||| |||||||| || || Sbjct 123805 GGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGTCATCTTCCAACTGCTTGCCAGC 123746 Query 68327 GAATATGAGTCTTTGTTGGTCGGGTGGA------ATGCCTTCCTTGTCTTGAATCTTTGC 68380 || ||||| || |||||| | | | ||||| || || || |||||||| | Sbjct 123745 AAA---GAGTCGCTGCTGGTCGTGGGCAGAGGGGATGCCCTCTTTATCCTGAATCTTGCC 123689 Query 68381 CTTGACGGCCTCGATGGTGTC 68401 ||||||| |||||||||||| Sbjct 123688 CTTGACGTTCTCGATGGTGTC 123668 >seq10009 Length=301806 Score = 91.5 bits (100), Expect = 3e-13 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||| ||| || ||||| || || || || | || | ||||||| Sbjct 118469 ACCAGGTGCAGGGTGAACT--TTCTGGATCTTTTAGTCAGACATGGTGCAGACATCTTCC 118412 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || | || || || || ||||| | || |||| | ||||| ||| Sbjct 118411 AGCTGCTTGCCTGAAAAGATTGACCTGTGCTGGTCAGAGGGTGTGCCGTT-TTGTCCTGA 118353 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||||||||||||| ||| || |||||| | ||| || |||| |||||||| || Sbjct 118352 ATCTTTGCCTTGACGTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGAGTGATGGTCTTG 118293 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||||| | || |||||||| Sbjct 118292 CTTGTCAGGGTCTGTATAAAGATCTGCAT 118264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917391669332240