Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15565 113 8e-20 seq53448 111 3e-19 >seq15565 Length=372695 Score = 113 bits (124), Expect = 8e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||| ||||| || | || |||||||| |||||||| || | Sbjct 366351 CTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCGACTGGGCCCTGCGC 366410 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||| | || || || | || || || | || |||||| | || || || Sbjct 366411 TGGATCGGGGACAAAGAGGCCACCTATGGAGAACGGGTTGTGGCCTTTGCTGCTGTGGAA 366470 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GAT 42787 || ||||||||||| ||| | || || || || |||||||||||| | | || | | ||| Sbjct 366471 GGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCTCAAG-AAACGGGGACTGAT 366529 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || || || || || ||||| || || ||||| || |||| Sbjct 366530 GCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATGAGG 366573 >seq53448 Length=237101 Score = 111 bits (122), Expect = 3e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | ||||| || ||| | |||||||| || |||| || Sbjct 207128 GGGGAGAGAGTGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCCTTTGCT 207187 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | ||||||||||| ||| ||| ||| || |||||||||||||| ||||| || ||||| Sbjct 207188 GCTATCTTCTGGCTGAAGAAGAGAGGCCTC-ATGCCCGGACTCACTTTCTCAAATGAACT 207246 Query 42815 CATCAGCAGGGACGA 42829 ||||||||||| || Sbjct 207247 GATCAGCAGGGATGA 207261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940004187293920