Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8072 129 1e-24 seq77463 109 1e-18 seq111151 87.8 4e-12 >seq8072 Length=1211495 Score = 129 bits (142), Expect = 1e-24 Identities = 166/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| ||||| | || ||||||| ||| || ||| |||| || ||||| | Sbjct 11719 CCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGAC 11660 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCG-AAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| | || || || ||| |||||||| | ||| || | || Sbjct 11659 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGG 11600 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 11599 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAAC 11540 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| || || ||||| ||||| |||||||| Sbjct 11539 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq77463 Length=3863 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | ||| ||| | || ||||| || ||||||||||| ||| Sbjct 269 TCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCCAACTGTTTTCCTGCAAAG 328 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | | ||| | |||||||||||||| || || || || || Sbjct 329 ATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTC 388 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || || || ||||| || Sbjct 389 TCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTGCCAGTTAGGGTCTTCACA 448 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 449 AAGATTTGCATTTTG 463 >seq111151 Length=252830 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| || || ||||| | || || | | ||||| | ||| || || | ||||||| Sbjct 126116 TTTTGAATGTTGTAGTCAGAGAAAGTAAGGCTATCTTCCACTTGCTTACCAGGGAAGATC 126057 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || | ||| ||| | || |||||| |||| ||||| || || | || | |||||| Sbjct 126056 AGCCTCTGCTGATCAGTAGGAATTCCTCCTTTGTCCTGAATCTTGACCTTTATATTTTCT 125997 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 ||||| || | || ||||| ||| |||| || ||||| | |||||||| || || Sbjct 125996 ATAGAGTCTGAGGGTTTAACTTCAAGCATGATAGTTTTCCCCCTAAGAGTCTTCACAAAA 125937 Query 288466 ATCTGCAT 288473 ||||| || Sbjct 125936 ATCTGAAT 125929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174103786160076