Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq77463 113 5e-20 seq170478 91.5 2e-13 seq4742 91.5 2e-13 seq8072 89.7 6e-13 seq27431 82.4 8e-11 seq16591 82.4 8e-11 >seq77463 Length=3863 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| |||| ||| ||| || || ||||||||||||| ||||| | | || || Sbjct 251 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCC 310 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||| || || || || ||||||| ||||||||| | | | | ||| || ||| | Sbjct 311 AACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGG 370 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || ||| ||||| || | ||||| || | |||||||| ||| Sbjct 371 ATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTG 430 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| ||||| ||||||||||||||||| Sbjct 431 CCAGTTAGGGTCTTCACAAAGATTTGCATTTT 462 >seq170478 Length=3692 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1556 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1497 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1496 ATACTAACGAGGA 1484 >seq4742 Length=317547 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 150831 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 150890 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 150891 ATACTAACGAGGA 150903 >seq8072 Length=1211495 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||| ||| | ||| ||||||| | || ||||| |||| || ||| || | || Sbjct 11705 CAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTACGGCCATC 11646 Query 42056 ATCTAGCTGCTTACCAGCG-AATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGT 42114 || |||||||| |||||| || || || | |||||| || | || | | ||||| | Sbjct 11645 TTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTTCCTTAT 11586 Query 42115 CCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 || ||| || |||| | | | ||||| | ||| || |||| ||||||| Sbjct 11585 CCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGGTGATGG 11526 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || ||||| || || || ||||| Sbjct 11525 TTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq27431 Length=5810 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2429 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2370 Query 57066 ATACTACCGAGGA 57078 ||| || ||| || Sbjct 2369 ATAATAACGAAGA 2357 >seq16591 Length=727689 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 44448 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 44389 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 44388 ATACTAACGAGGA 44376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540719168061280