Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq8072 98.7 1e-15 seq77463 96.9 3e-15 seq9155 91.5 1e-13 seq6003 82.4 8e-11 >seq8072 Length=1211495 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | ||| | ||| ||||||| || || || ||| | |||||||| || | Sbjct 11720 ACCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGA 11661 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA-ATGAGCCGCTGCTGGTCGGGAG 64334 | || || | ||||| ||||||||||| || || || |||| |||||| || |||| Sbjct 11660 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAG 11601 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||| || || || || || ||| ||| || | || || || || | Sbjct 11600 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAA 11541 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||| || || || | || || |||||||| ||||| Sbjct 11540 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq77463 Length=3863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || || |||||||| | || ||| | | ||||| | ||| || || Sbjct 263 GTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCCAACTGTTTTCCT 322 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | ||||||||| || | || | ||||| || || || || ||| Sbjct 323 GCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGGATCTTGGCCTTG 382 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||||| || |||| || ||||| || | || | ||||||||| || | || Sbjct 383 ACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTGCCAGTTAGGGTC 442 Query 64427 TTTACGAAAATTTGCATTTTAAT 64449 || || || ||||||||||| || Sbjct 443 TTCACAAAGATTTGCATTTTGAT 465 >seq9155 Length=358325 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | || | ||||| || ||||||| || | | ||| | | || Sbjct 307799 AAGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATC 307740 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||||||| | || || | |||||||| || || || ||||| || || Sbjct 307739 CTCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTC 307680 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| ||| | || |||| || | || || | ||| | ||| Sbjct 307679 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGT 307620 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 307619 CTTGCCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq6003 Length=190268 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/204 (69%), Gaps = 12/204 (6%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||||| | || ||||| | ||||| ||||||||||| Sbjct 5743 GTAGACTCTTTCTGGATGTTGTAATTGGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 5684 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGG----AGGAATTCCTTCTTTTTCTTGTATTTTTTG 64362 ||| | | ||||||||||| ||| | || ||||| || || || || Sbjct 5683 GCAAACA--------TGCTGGTCGGGGGGTGGGAGTGCCCTCTTTATCCTGGATCTTGGC 5632 Query 64363 CTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| ||| | || |||| || ||||| | || | |||||||| ||||| Sbjct 5631 CTTGACATTCTCGATGGTGTCACTGGGCTCCACCATCAGGGTGATGGTCTTGCTGGTCAG 5572 Query 64423 AGTTTTTACGAAAATTTGCATTTT 64446 | || ||||| ||||||||||| Sbjct 5571 GGACTTCACGAAGATTTGCATTTT 5548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497351168054480