Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8072 102 8e-17 >seq8072 Length=1211495 Score = 102 bits (112), Expect = 8e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || |||||||| ||| | || ||||| ||| | || ||||| || Sbjct 11722 GCACCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCA 11663 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA-GATCAATCGCTGCTGATCGGG 127002 || || || ||| || ||||| || |||||| | ||||| | |||||| || || Sbjct 11662 GACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGG 11603 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 ||| || || ||||| ||| ||| || ||||| | ||| | |||||| || Sbjct 11602 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTC 11543 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | ||||| || || || || || || ||||||||||| Sbjct 11542 AACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473318001690080