Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq116 176 6e-39 seq3418 109 8e-19 >seq116 Length=588768 Score = 176 bits (194), Expect = 6e-39 Identities = 210/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||||||| ||| ||||| |||||||||| ||||| || | || Sbjct 401228 AAGGGACAGCCCTTCACATTGTTACAGATGAGAGACTGAATGGAGGCGGTGTTGATAATC 401169 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || ||||||||| || || || ||| Sbjct 401168 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAAATGGGA 401109 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 401108 TTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCCCCAAAG 401049 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| ||||| || | || |||| | Sbjct 401048 ATAGCATCTGGACGGGGCTTTTCCACCAGCAGGGCAGGATAGAGCTCCATGGCATCGATG 400989 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| || || || |||||||| ||| Sbjct 400988 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCT 400944 Score = 154 bits (170), Expect = 2e-32 Identities = 211/292 (72%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || |||||||| || || || ||||| || |||| | |||||||| |||||| Sbjct 400176 CCGGCCAGCGATCTGTCTGGTAAATGACTCAACAAAGTGGGTGAGTCCGTGCTCGATGAG 400117 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| || | ||| |||| | ||| | || | || Sbjct 400116 GATGGAGTTGTTGTAGAGGAACTGCTTGTAGTTGTACTCCTGGTCTTCGATCTGGAAGCT 400057 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | ||||| || ||||| ||||| || || |||||||| Sbjct 400056 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCGGCTGCGATGCGGTTCTG 399997 Query 9612 GTACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| ||| || | | ||| || | ||||||||| || | || | ||||||||| | Sbjct 399996 GTACTGGAACTGCTG-ATTGAAAAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAGC 399938 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || || ||||| || || | | ||| | ||| || || || ||||| || Sbjct 399937 CACTTAGGTGCTGCACGTAGTCTTCGATCACAATCTTGATCGTCTCCCCTGT 399886 Score = 125 bits (138), Expect = 1e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 9761 CCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATA 9820 |||| || || || || |||| |||||||| || || |||||||| || | |||||| | Sbjct 399669 CCCACTCAGGATGCTCCCGTTTAAGAACATCACACACTCTGTTGTGCTCCCGCAGCCAGA 399610 Query 9821 TGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGC 9880 |||| || |||||||| | ||| ||||| | |||||| || || | |||||||||||| | Sbjct 399609 TGGTAGCATACATCATCAGACCAGGCACCAGACCAAAGACCTCCTGCCCCACTGCAAACC 399550 Query 9881 GCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGG 9940 | |||| || || | || | || | ||| | ||||| || ||||| || |||| Sbjct 399549 GAAGATGCTCAGGGGTGTGAGGTGGGTAGATCATCTCTACCTGAGTGTCTTTAACTGTGG 399490 Query 9941 GGGGATACATTTCACCGTCAATAACCT 9967 | || ||||| || || |||| |||| Sbjct 399489 GAGGGTACATCTCTCCACCAATGACCT 399463 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10388 CACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTAT 10447 |||||||||| || | ||||| |||||||| || ||| || || || | ||| || | Sbjct 397297 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCAGCAACAGGCGGAAGTGCTCTGGTGT 397238 Query 10448 AATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCG 10507 | ||||| || || || || ||||||||| | ||||| ||||| | | |||||| | Sbjct 397237 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 397178 Query 10508 GGGGACTGTCAATCATCTCGGACCTGGCTA 10537 | ||||||||||||| | || ||||||| Sbjct 397177 GCGGACTGTCAATCAAATGTGATCTGGCTA 397148 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 10123 TTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAAA 10182 |||||||||| |||| ||| ||||| | ||||||||| | ||| ||| | |||| Sbjct 398163 TTACCCCATGGCCCAGGCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAAAA 398104 Query 10183 ATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCGG 10242 | || || || ||||| || | || || || ||||||| || | ||| |||||||| | Sbjct 398103 ACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTCGAGCCTTGGGGATCAG 398044 Query 10243 GGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 |||| || | |||| | || ||||||||||| || | | |||| || || || Sbjct 398043 GGATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAACTTCTTTTGAGTCAGGAAG 397989 >seq3418 Length=466320 Score = 109 bits (120), Expect = 8e-19 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || || || || ||||| |||||||| ||||| ||| | Sbjct 38303 GCTGTGTTGACAAGGTTGAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCT 38362 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || || ||| ||| | | ||| || || | |||||| |||||||| | ||| || Sbjct 38363 GGAGAACAAATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATC 38422 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 |||||||| || ||||||| || | ||||| | || || || | ||||| Sbjct 38423 ATGCTCTCCCCAAAGATGGAGTTAGGCTGGCACTTTTCCAGAATCAACCCTGGGTAGAAC 38482 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | || |||| ||| || || || | |||||||| || || ||||||||||| ||| Sbjct 38483 TCTAAGGCATCGATGTCACCGTACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 38542 Query 9176 ACA 9178 || Sbjct 38543 GCA 38545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720405708522800